Gene annotation
Transcriptome id Sobic.004G223000.1
Synonym Sb04g026740
Functional annotation MIF4G domain containing protein, putative, expressed
UniProt C5XY51
Pfam PF04050 PF02854
Panther DB PTHR12839
NCBI CDD -
KEGG Orthology K14327; UPF2, regulator of nonsense transcripts 2
Gene Ontology GO:0005515; protein binding GO:0003723RNA binding


Orthologs (automatic annotation)
TAIR AT2G39260 : binding;RNA binding
RAP-DB (Rice) LOC_Os02g42040.1 : MIF4G domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021064 , Zm00025a032060
Brachypodium KQK00439 , PNT61511 , PNT61510 , KQJ83656 , KQJ83657 , PNT69107 , PNT61508 , PNT61509
Barley HORVU6Hr1G059150.10 , HORVU6Hr1G059150.8 , HORVU6Hr1G059150.9 , HORVU6Hr1G059150.1 , HORVU6Hr1G059150.2 , HORVU6Hr1G059150.3 , HORVU6Hr1G059150.4 , HORVU6Hr1G059150.5 , HORVU6Hr1G059150.6 , HORVU6Hr1G059150.7
Wheat TraesCS6B02G259600 , TraesCS6B02G259600 , TraesCS6B02G259600 , TraesCS6A02G221700 , TraesCS6A02G221700 , TraesCS6A02G221700 , TraesCS6A02G221700 , TraesCS6D02G213600 , TraesCS6D02G213600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
2 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
3 Sobic.003G186000 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.002G316600 expressed protein -
5 Sobic.001G527800 DCL2, putative, expressed K11592: DICER1, endoribonuclease Dicer
6 Sobic.007G062800 SET domain containing protein, expressed -
7 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
8 Sobic.010G010700 PHD-finger family protein, expressed -
9 Sobic.001G370900 expressed protein K11665: INO80, DNA helicase INO80
10 Sobic.008G001200 RNA recognition motif containing protein, putative, expressed -
11 Sobic.003G205200 expressed protein K19027: zinc finger FYVE domain-containing protein 26
12 Sobic.010G105200 SYD, putative, expressed -
13 Sobic.003G196300 DNA binding protein, putative, expressed -
14 Sobic.002G146300 cig3, putative, expressed K14409: SMG7, protein SMG7
15 Sobic.003G166750 - K15188: cyclin T
16 Sobic.010G169600 OsCML2 - Calmodulin-related calcium sensor protein, expressed -
17 Sobic.009G256300 DNA binding protein, putative, expressed -
18 Sobic.009G251500 chromosome segregation protein sudA, putative, expressed K06669: SMC3, structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
19 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
20 Sobic.001G534700 plus-3 domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic004G223000 Sobic004G223000 Sobic001G230000 Sobic001G230000 Sobic004G223000--Sobic001G230000 Sobic010G206900 Sobic010G206900 Sobic004G223000--Sobic010G206900 Sobic003G186000 Sobic003G186000 Sobic004G223000--Sobic003G186000 Sobic002G316600 Sobic002G316600 Sobic004G223000--Sobic002G316600 Sobic001G527800 Sobic001G527800 Sobic004G223000--Sobic001G527800 Sobic007G062800 Sobic007G062800 Sobic004G223000--Sobic007G062800 Sobic004G276400 Sobic004G276400 Sobic004G223000--Sobic004G276400 Sobic010G010700 Sobic010G010700 Sobic004G223000--Sobic010G010700 Sobic001G370900 Sobic001G370900 Sobic004G223000--Sobic001G370900 Sobic001G230000--Sobic010G206900 Sobic003G155100 Sobic003G155100 Sobic001G230000--Sobic003G155100 Sobic008G001200 Sobic008G001200 Sobic001G230000--Sobic008G001200 Sobic001G230000--Sobic004G276400 Sobic001G230000--Sobic004G223000 Sobic009G256300 Sobic009G256300 Sobic001G230000--Sobic009G256300 Sobic001G230000--Sobic010G010700 Sobic001G298900 Sobic001G298900 Sobic001G230000--Sobic001G298900 Sobic008G044100 Sobic008G044100 Sobic001G230000--Sobic008G044100 Sobic010G206900--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic010G206900--Sobic001G365900 Sobic004G034900 Sobic004G034900 Sobic010G206900--Sobic004G034900 Sobic001G534700 Sobic001G534700 Sobic010G206900--Sobic001G534700 Sobic010G247800 Sobic010G247800 Sobic010G206900--Sobic010G247800 Sobic002G411600 Sobic002G411600 Sobic010G206900--Sobic002G411600 Sobic010G206900--Sobic008G001200 Sobic003G196300 Sobic003G196300 Sobic010G206900--Sobic003G196300 Sobic009G165700 Sobic009G165700 Sobic010G206900--Sobic009G165700 Sobic003G186000--Sobic004G276400 Sobic010G105200 Sobic010G105200 Sobic003G186000--Sobic010G105200 Sobic003G186000--Sobic010G010700 Sobic005G001000 Sobic005G001000 Sobic003G186000--Sobic005G001000 Sobic003G205200 Sobic003G205200 Sobic003G186000--Sobic003G205200 Sobic001G194200 Sobic001G194200 Sobic003G186000--Sobic001G194200 Sobic003G186000--Sobic007G062800 Sobic003G186000--Sobic008G001200 Sobic007G103100 Sobic007G103100 Sobic003G186000--Sobic007G103100 Sobic002G316600--Sobic007G103100 Sobic002G316600--Sobic001G527800 Sobic002G316600--Sobic003G186000 Sobic002G316600--Sobic004G276400 Sobic001G529600 Sobic001G529600 Sobic002G316600--Sobic001G529600 Sobic003G166750 Sobic003G166750 Sobic002G316600--Sobic003G166750 Sobic002G316600--Sobic001G194200 Sobic001G289800 Sobic001G289800 Sobic002G316600--Sobic001G289800 Sobic010G079500 Sobic010G079500 Sobic002G316600--Sobic010G079500 Sobic001G527800--Sobic002G316600 Sobic001G527800--Sobic008G001200 Sobic001G527800--Sobic004G276400 Sobic001G527800--Sobic010G206900 Sobic001G527800--Sobic003G166750 Sobic001G527800--Sobic003G186000 Sobic001G527800--Sobic003G196300 Sobic001G527800--Sobic007G103100 Sobic010G123600 Sobic010G123600 Sobic001G527800--Sobic010G123600 Sobic001G540400 Sobic001G540400 Sobic007G062800--Sobic001G540400 Sobic005G112300 Sobic005G112300 Sobic007G062800--Sobic005G112300 Sobic002G405800 Sobic002G405800 Sobic007G062800--Sobic002G405800 Sobic002G008900 Sobic002G008900 Sobic007G062800--Sobic002G008900 Sobic007G062800--Sobic010G010700 Sobic004G242400 Sobic004G242400 Sobic007G062800--Sobic004G242400 Sobic007G062800--Sobic004G034900 Sobic007G062800--Sobic004G276400 Sobic002G397500 Sobic002G397500 Sobic007G062800--Sobic002G397500 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic010G010700--Sobic010G206900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic010G010700--Sobic008G001200 Sobic010G010700--Sobic003G186000 Sobic008G098900 Sobic008G098900 Sobic001G370900--Sobic008G098900 Sobic001G370900--Sobic005G001000 Sobic009G256400 Sobic009G256400 Sobic001G370900--Sobic009G256400 Sobic002G146300 Sobic002G146300 Sobic001G370900--Sobic002G146300 Sobic001G370900--Sobic003G205200 Sobic001G370900--Sobic001G194200 Sobic001G370900--Sobic004G276400 Sobic001G370900--Sobic008G001200 Sobic001G457800 Sobic001G457800 Sobic001G370900--Sobic001G457800
Octagon: transcription factors


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