Gene annotation
Transcriptome id Sobic.009G256300.1,Sobic.009G256300.19,Sobic.009G256300.2,Sobic.009G256300.22,Sobic.009G256300.7,Sobic.009G256300.21,Sobic.009G256300.20,Sobic.009G256300.4,Sobic.009G256300.8,Sobic.009G256300.10,Sobic.009G256300.13,Sobic.009G256300.16
Synonym
Functional annotation DNA binding protein, putative, expressed
UniProt A0A1B6PAE6 , A0A1Z5R4Q6 , A0A1B6PAJ0 , A0A1Z5R486 , A0A1B6PAG7 , A0A1B6PAD5 , A0A1B6PAQ5 , A0A1B6PA99 , A0A1Z5R415 , A0A1B6PB93 , A0A1B6PAN5 , A0A1B6PAG0
Pfam PF13921 PF07529
Panther DB PTHR10799 PTHR10799:SF698
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G24880 : Helicase/SANT-associated, DNA binding protein
RAP-DB (Rice) LOC_Os08g08000.1 : DNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a036787
Brachypodium KQK04577
Barley -
Wheat TraesCS1A02G439500 , TraesCS1A02G439500 , TraesCS1D02G448700 , TraesCS1B02G474800 , TraesCS1B02G474800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
2 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
3 Sobic.004G242400 nuclear-pore anchor, putative, expressed K09291: TPR, MLP1, nucleoprotein TPR
4 Sobic.010G010700 PHD-finger family protein, expressed -
5 Sobic.010G123600 WW domain containing protein, expressed -
6 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
7 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
8 Sobic.004G276400 expressed protein K11320: E1A-binding protein p400
9 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
10 Sobic.007G062800 SET domain containing protein, expressed -
11 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
12 Sobic.003G196300 DNA binding protein, putative, expressed -
13 Sobic.010G105200 SYD, putative, expressed -
14 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
15 Sobic.008G132900 expressed protein -
16 Sobic.003G388100 expressed protein -
17 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
18 Sobic.010G001100 chromo domain containing protein, expressed -
19 Sobic.007G063000 expressed protein -
20 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11


Gene co-expression network
sample Sobic009G256300 Sobic009G256300 Sobic010G112100 Sobic010G112100 Sobic009G256300--Sobic010G112100 Sobic003G389200 Sobic003G389200 Sobic009G256300--Sobic003G389200 Sobic004G242400 Sobic004G242400 Sobic009G256300--Sobic004G242400 Sobic010G010700 Sobic010G010700 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic003G360400 Sobic003G360400 Sobic009G256300--Sobic003G360400 Sobic009G109200 Sobic009G109200 Sobic009G256300--Sobic009G109200 Sobic004G276400 Sobic004G276400 Sobic009G256300--Sobic004G276400 Sobic001G542400 Sobic001G542400 Sobic009G256300--Sobic001G542400 Sobic010G112100--Sobic003G360400 Sobic005G112300 Sobic005G112300 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic003G408600 Sobic003G408600 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic003G389200--Sobic009G256300 Sobic010G206900 Sobic010G206900 Sobic003G389200--Sobic010G206900 Sobic003G389200--Sobic003G360400 Sobic003G389200--Sobic010G112100 Sobic003G389200--Sobic010G010700 Sobic001G365900 Sobic001G365900 Sobic003G389200--Sobic001G365900 Sobic003G389200--Sobic001G540400 Sobic007G105100 Sobic007G105100 Sobic003G389200--Sobic007G105100 Sobic001G230000 Sobic001G230000 Sobic003G389200--Sobic001G230000 Sobic004G242400--Sobic007G062800 Sobic004G242400--Sobic009G109200 Sobic010G105200 Sobic010G105200 Sobic004G242400--Sobic010G105200 Sobic004G242400--Sobic004G276400 Sobic004G242400--Sobic010G010700 Sobic004G242400--Sobic010G112100 Sobic004G314000 Sobic004G314000 Sobic004G242400--Sobic004G314000 Sobic004G242400--Sobic009G256300 Sobic004G242400--Sobic001G433800 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic010G123600--Sobic010G010700 Sobic010G123600--Sobic009G256300 Sobic003G170900 Sobic003G170900 Sobic010G123600--Sobic003G170900 Sobic005G167700 Sobic005G167700 Sobic010G123600--Sobic005G167700 Sobic010G123600--Sobic005G112300 Sobic010G123600--Sobic001G433800 Sobic010G123600--Sobic010G112100 Sobic010G123600--Sobic001G194200 Sobic010G123600--Sobic008G001200 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic003G360400--Sobic009G256300 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic009G109200--Sobic001G542400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic004G276400--Sobic003G186000 Sobic004G276400--Sobic010G010700 Sobic004G276400--Sobic010G105200 Sobic004G276400--Sobic001G194200 Sobic004G276400--Sobic004G034900 Sobic004G276400--Sobic007G062800 Sobic004G291900 Sobic004G291900 Sobic004G276400--Sobic004G291900 Sobic004G276400--Sobic004G242400 Sobic004G276400--Sobic008G001200 Sobic001G299700 Sobic001G299700 Sobic001G542400--Sobic001G299700 Sobic001G542400--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic001G542400--Sobic001G400500 Sobic001G542400--Sobic009G256300 Sobic001G542400--Sobic010G112100 Sobic001G542400--Sobic004G276400 Sobic001G542400--Sobic010G105200 Sobic001G542400--Sobic005G008800 Sobic001G542400--Sobic008G001200
Octagon: transcription factors


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