Gene annotation
Transcriptome id Sobic.008G132900.2,Sobic.008G132900.1
Synonym Sb08g018493
Functional annotation expressed protein
UniProt A0A1B6PDF7 , A0A1Z5R6E9
Pfam PF10650
Panther DB PTHR21563
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G39580 : -
RAP-DB (Rice) LOC_Os12g37890.1 : expressed protein
MaizeGDB (Corn) Zm00025a004197
Brachypodium KQJ86266 , KQJ86267 , PNT62497 , PNT62496 , PNT62498
Barley HORVU5Hr1G022050.13 , HORVU5Hr1G022050.10 , HORVU5Hr1G022050.11 , HORVU5Hr1G022050.16 , HORVU5Hr1G022050.17 , HORVU5Hr1G022050.15 , HORVU5Hr1G022050.18 , HORVU5Hr1G022050.19 , HORVU5Hr1G022050.8 , HORVU5Hr1G022050.9 , HORVU5Hr1G022050.1 , HORVU5Hr1G022050.2 , HORVU5Hr1G022050.3 , HORVU5Hr1G022050.4 , HORVU5Hr1G022050.5 , HORVU5Hr1G022050.6 , HORVU5Hr1G022050.7 , HORVU5Hr1G022050.12 , HORVU5Hr1G022050.14 , HORVU5Hr1G022050.29 , HORVU5Hr1G022050.28 , HORVU5Hr1G022050.23 , HORVU5Hr1G022050.22 , HORVU5Hr1G022050.21 , HORVU5Hr1G022050.20 , HORVU5Hr1G022050.27 , HORVU5Hr1G022050.26 , HORVU5Hr1G022050.25 , HORVU5Hr1G022050.24 , HORVU5Hr1G022050.30 , HORVU5Hr1G022050.31 , HORVU5Hr1G022050.32 , HORVU5Hr1G022050.33 , HORVU5Hr1G022050.34 , HORVU5Hr1G022050.35
Wheat TraesCS5B02G090400 , TraesCS5A02G084500 , TraesCS5D02G096900 , TraesCS5D02G096900 , TraesCS5D02G096900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G256300 DNA binding protein, putative, expressed -
2 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
3 Sobic.001G400500 calpain, putative, expressed -
4 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
5 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
6 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
7 Sobic.010G105200 SYD, putative, expressed -
8 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -
9 Sobic.010G001100 chromo domain containing protein, expressed -
10 Sobic.008G016300 expressed protein -
11 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
12 Sobic.002G396500 FAT domain-containing protein, putative, expressed K08874: transformation/transcription domain-associated protein
13 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
14 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
15 Sobic.001G352900 intron-binding protein aquarius, putative, expressed K12874: intron-binding protein aquarius
16 Sobic.004G248600 expressed protein K15166: mediator of RNA polymerase II transcription subunit 23
17 Sobic.001G230000 expressed protein K10779: transcriptional regulator ATRX
18 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
19 Sobic.003G196300 DNA binding protein, putative, expressed -
20 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11


Gene co-expression network
sample Sobic008G132900 Sobic008G132900 Sobic009G256300 Sobic009G256300 Sobic008G132900--Sobic009G256300 Sobic009G109200 Sobic009G109200 Sobic008G132900--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic008G132900--Sobic001G400500 Sobic010G079500 Sobic010G079500 Sobic008G132900--Sobic010G079500 Sobic010G112100 Sobic010G112100 Sobic008G132900--Sobic010G112100 Sobic001G542400 Sobic001G542400 Sobic008G132900--Sobic001G542400 Sobic010G105200 Sobic010G105200 Sobic008G132900--Sobic010G105200 Sobic010G094700 Sobic010G094700 Sobic008G132900--Sobic010G094700 Sobic010G001100 Sobic010G001100 Sobic008G132900--Sobic010G001100 Sobic009G256300--Sobic010G112100 Sobic003G389200 Sobic003G389200 Sobic009G256300--Sobic003G389200 Sobic004G242400 Sobic004G242400 Sobic009G256300--Sobic004G242400 Sobic010G010700 Sobic010G010700 Sobic009G256300--Sobic010G010700 Sobic010G123600 Sobic010G123600 Sobic009G256300--Sobic010G123600 Sobic003G360400 Sobic003G360400 Sobic009G256300--Sobic003G360400 Sobic009G256300--Sobic009G109200 Sobic004G276400 Sobic004G276400 Sobic009G256300--Sobic004G276400 Sobic009G256300--Sobic001G542400 Sobic009G109200--Sobic010G105200 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic001G400500--Sobic001G542400 Sobic001G400500--Sobic009G109200 Sobic001G400500--Sobic010G112100 Sobic001G400500--Sobic005G008800 Sobic001G063700 Sobic001G063700 Sobic001G400500--Sobic001G063700 Sobic001G400500--Sobic009G256300 Sobic001G400500--Sobic010G105200 Sobic001G400500--Sobic001G540400 Sobic001G400500--Sobic003G408600 Sobic001G529600 Sobic001G529600 Sobic010G079500--Sobic001G529600 Sobic002G316600 Sobic002G316600 Sobic010G079500--Sobic002G316600 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic010G079500--Sobic008G132900 Sobic003G260400 Sobic003G260400 Sobic010G079500--Sobic003G260400 Sobic010G112100--Sobic003G360400 Sobic005G112300 Sobic005G112300 Sobic010G112100--Sobic005G112300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic001G433800 Sobic001G433800 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic010G112100--Sobic004G242400 Sobic010G112100--Sobic003G389200 Sobic001G299700 Sobic001G299700 Sobic001G542400--Sobic001G299700 Sobic001G542400--Sobic009G109200 Sobic001G542400--Sobic001G400500 Sobic001G542400--Sobic009G256300 Sobic001G542400--Sobic010G112100 Sobic001G542400--Sobic004G276400 Sobic001G542400--Sobic010G105200 Sobic001G542400--Sobic005G008800 Sobic008G001200 Sobic008G001200 Sobic001G542400--Sobic008G001200 Sobic010G105200--Sobic004G276400 Sobic010G105200--Sobic009G109200 Sobic003G186000 Sobic003G186000 Sobic010G105200--Sobic003G186000 Sobic007G098500 Sobic007G098500 Sobic010G105200--Sobic007G098500 Sobic010G105200--Sobic004G242400 Sobic004G034900 Sobic004G034900 Sobic010G105200--Sobic004G034900 Sobic010G105200--Sobic007G062800 Sobic010G105200--Sobic005G008800 Sobic010G105200--Sobic010G010700 Sobic005G191900 Sobic005G191900 Sobic010G094700--Sobic005G191900 Sobic010G094700--Sobic009G109200 Sobic010G279450 Sobic010G279450 Sobic010G094700--Sobic010G279450 Sobic010G094700--Sobic010G079500 Sobic010G094700--Sobic001G529600 Sobic004G096400 Sobic004G096400 Sobic010G094700--Sobic004G096400 Sobic001G311500 Sobic001G311500 Sobic010G094700--Sobic001G311500 Sobic010G094700--Sobic008G132900 Sobic001G393900 Sobic001G393900 Sobic010G094700--Sobic001G393900 Sobic010G065300 Sobic010G065300 Sobic010G001100--Sobic010G065300 Sobic004G048800 Sobic004G048800 Sobic010G001100--Sobic004G048800 Sobic002G396500 Sobic002G396500 Sobic010G001100--Sobic002G396500 Sobic003G293200 Sobic003G293200 Sobic010G001100--Sobic003G293200 Sobic010G001100--Sobic004G242400 Sobic010G001100--Sobic009G109200 Sobic002G154000 Sobic002G154000 Sobic010G001100--Sobic002G154000 Sobic001G352900 Sobic001G352900 Sobic010G001100--Sobic001G352900 Sobic010G001100--Sobic009G256300
Octagon: transcription factors


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