Gene annotation
Transcriptome id Sobic.006G119400.1
Synonym Sb06g020040, FRS6
Functional annotation SWIM zinc finger family protein, putative, expressed
UniProt C5YAF7
Pfam PF04434 PF03101 PF10551
Panther DB PTHR31669 PTHR31669:SF16
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0006355regulation of transcription, DNA-templated


Orthologs (automatic annotation)
TAIR AT1G52520 : FAR1-related sequence 6
RAP-DB (Rice) LOC_Os04g40060.1 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) -
Brachypodium KQJ83148
Barley HORVU2Hr1G082470.3 , HORVU2Hr1G082470.2 , HORVU2Hr1G082470.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
2 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3
3 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
4 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
5 Sobic.002G043100 histone deacetylase, putative, expressed K11407: histone deacetylase 6
6 Sobic.006G049900 MYB family transcription factor, putative, expressed K09522: DnaJ homolog subfamily C member 2
7 Sobic.008G132900 expressed protein -
8 Sobic.008G016300 expressed protein -
9 Sobic.001G298900 agenet domain containing protein, putative, expressed -
10 Sobic.009G256300 DNA binding protein, putative, expressed -
11 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
12 Sobic.002G391600 U5 small nuclear ribonucleoprotein 200 kDa helicase, putative, expressed K12854: SNRNP200, pre-mRNA-splicing helicase BRR2
13 Sobic.002G316600 expressed protein -
14 Sobic.004G134200 GTP binding protein, putative, expressed -
15 Sobic.003G196300 DNA binding protein, putative, expressed -
16 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
17 Sobic.007G065100 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
18 Sobic.004G178500 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@auxin response factor 7, putative, expressed K14486: K14486, auxin response factor
19 Sobic.003G101700 dnaJ domain containing protein, expressed -
20 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase


Gene co-expression network
sample Sobic006G119400 Sobic006G119400 Sobic010G079500 Sobic010G079500 Sobic006G119400--Sobic010G079500 Sobic005G142800 Sobic005G142800 Sobic006G119400--Sobic005G142800 Sobic004G107200 Sobic004G107200 Sobic006G119400--Sobic004G107200 Sobic010G053600 Sobic010G053600 Sobic006G119400--Sobic010G053600 Sobic002G043100 Sobic002G043100 Sobic006G119400--Sobic002G043100 Sobic006G049900 Sobic006G049900 Sobic006G119400--Sobic006G049900 Sobic008G132900 Sobic008G132900 Sobic006G119400--Sobic008G132900 Sobic008G016300 Sobic008G016300 Sobic006G119400--Sobic008G016300 Sobic001G298900 Sobic001G298900 Sobic006G119400--Sobic001G298900 Sobic001G529600 Sobic001G529600 Sobic010G079500--Sobic001G529600 Sobic002G316600 Sobic002G316600 Sobic010G079500--Sobic002G316600 Sobic009G109200 Sobic009G109200 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic010G079500--Sobic008G132900 Sobic003G260400 Sobic003G260400 Sobic010G079500--Sobic003G260400 Sobic005G142800--Sobic006G119400 Sobic005G142800--Sobic001G298900 Sobic001G124100 Sobic001G124100 Sobic005G142800--Sobic001G124100 Sobic004G134200 Sobic004G134200 Sobic005G142800--Sobic004G134200 Sobic008G172300 Sobic008G172300 Sobic005G142800--Sobic008G172300 Sobic002G345700 Sobic002G345700 Sobic005G142800--Sobic002G345700 Sobic002G418600 Sobic002G418600 Sobic005G142800--Sobic002G418600 Sobic005G142800--Sobic010G079500 Sobic007G111400 Sobic007G111400 Sobic005G142800--Sobic007G111400 Sobic002G431400 Sobic002G431400 Sobic004G107200--Sobic002G431400 Sobic002G425500 Sobic002G425500 Sobic004G107200--Sobic002G425500 Sobic004G107200--Sobic006G119400 Sobic003G101500 Sobic003G101500 Sobic004G107200--Sobic003G101500 Sobic004G107200--Sobic002G043100 Sobic001G501800 Sobic001G501800 Sobic004G107200--Sobic001G501800 Sobic001G456900 Sobic001G456900 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic006G269800 Sobic006G269800 Sobic004G107200--Sobic006G269800 Sobic001G352900 Sobic001G352900 Sobic010G053600--Sobic001G352900 Sobic002G391600 Sobic002G391600 Sobic010G053600--Sobic002G391600 Sobic010G053600--Sobic009G109200 Sobic001G004400 Sobic001G004400 Sobic010G053600--Sobic001G004400 Sobic007G171100 Sobic007G171100 Sobic010G053600--Sobic007G171100 Sobic004G260100 Sobic004G260100 Sobic010G053600--Sobic004G260100 Sobic006G036100 Sobic006G036100 Sobic010G053600--Sobic006G036100 Sobic004G248600 Sobic004G248600 Sobic010G053600--Sobic004G248600 Sobic004G242400 Sobic004G242400 Sobic010G053600--Sobic004G242400 Sobic002G043100--Sobic004G107200 Sobic001G451300 Sobic001G451300 Sobic002G043100--Sobic001G451300 Sobic002G043100--Sobic001G501800 Sobic002G399800 Sobic002G399800 Sobic002G043100--Sobic002G399800 Sobic010G262100 Sobic010G262100 Sobic002G043100--Sobic010G262100 Sobic002G043100--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic002G043100--Sobic003G309050 Sobic002G043100--Sobic002G425500 Sobic001G393900 Sobic001G393900 Sobic002G043100--Sobic001G393900 Sobic006G049900--Sobic002G399800 Sobic006G049900--Sobic010G079500 Sobic006G049900--Sobic002G316600 Sobic006G049900--Sobic003G260400 Sobic006G049900--Sobic006G119400 Sobic004G276400 Sobic004G276400 Sobic006G049900--Sobic004G276400 Sobic005G122700 Sobic005G122700 Sobic006G049900--Sobic005G122700 Sobic003G441900 Sobic003G441900 Sobic006G049900--Sobic003G441900 Sobic006G049900--Sobic001G004400 Sobic009G256300 Sobic009G256300 Sobic008G132900--Sobic009G256300 Sobic008G132900--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic008G132900--Sobic001G400500 Sobic008G132900--Sobic010G079500 Sobic010G112100 Sobic010G112100 Sobic008G132900--Sobic010G112100 Sobic001G542400 Sobic001G542400 Sobic008G132900--Sobic001G542400 Sobic010G105200 Sobic010G105200 Sobic008G132900--Sobic010G105200 Sobic010G094700 Sobic010G094700 Sobic008G132900--Sobic010G094700 Sobic010G001100 Sobic010G001100 Sobic008G132900--Sobic010G001100 Sobic008G016300--Sobic002G316600 Sobic008G016300--Sobic002G391600 Sobic010G010700 Sobic010G010700 Sobic008G016300--Sobic010G010700 Sobic008G016300--Sobic009G256300 Sobic006G055200 Sobic006G055200 Sobic008G016300--Sobic006G055200 Sobic008G016300--Sobic009G109200 Sobic010G206900 Sobic010G206900 Sobic008G016300--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic008G016300--Sobic004G034900 Sobic007G103100 Sobic007G103100 Sobic008G016300--Sobic007G103100 Sobic001G298900--Sobic001G230000 Sobic006G219600 Sobic006G219600 Sobic001G298900--Sobic006G219600 Sobic002G198200 Sobic002G198200 Sobic001G298900--Sobic002G198200 Sobic004G178500 Sobic004G178500 Sobic001G298900--Sobic004G178500 Sobic003G155100 Sobic003G155100 Sobic001G298900--Sobic003G155100 Sobic008G044100 Sobic008G044100 Sobic001G298900--Sobic008G044100 Sobic003G388100 Sobic003G388100 Sobic001G298900--Sobic003G388100 Sobic001G298900--Sobic005G142800 Sobic004G146600 Sobic004G146600 Sobic001G298900--Sobic004G146600
Octagon: transcription factors


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