Gene annotation
Transcriptome id Sobic.002G043100.3
Synonym ATHDA15, Sb02g003690, HDA15
Functional annotation histone deacetylase, putative, expressed
UniProt A0A1W0W2A8
Pfam PF00850
Panther DB PTHR10625 PTHR10625:SF120
NCBI CDD KOG1344; Predicted histone deacetylase
KEGG Orthology K11407; histone deacetylase 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G18520 : histone deacetylase 15
RAP-DB (Rice) LOC_Os07g06980.1 : histone deacetylase, putative, expressed
MaizeGDB (Corn) Zm00025a045081
Brachypodium KQK20780 , KQK20781 , PNT77000 , PNT77001 , PNT77002 , PNT77003 , PNT77004 , PNT77005 , PNT77006 , KQK20779 , KQK20778
Barley HORVU5Hr1G017550.5 , HORVU5Hr1G017550.4 , HORVU5Hr1G017550.1 , HORVU5Hr1G017550.3 , HORVU5Hr1G017550.9 , HORVU5Hr1G017550.8 , HORVU5Hr1G017550.11 , HORVU5Hr1G017550.10 , HORVU5Hr1G017550.13 , HORVU5Hr1G017550.12 , HORVU5Hr1G017550.15 , HORVU5Hr1G017550.14 , HORVU5Hr1G017550.17 , HORVU5Hr1G017550.16 , HORVU5Hr1G017550.7 , HORVU5Hr1G017550.6
Wheat TraesCS5B02G072100 , TraesCS5D02G076100 , TraesCS5D02G076100 , TraesCS5A02G065300
Populus -


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cDNA sequences
Sobic.002G043100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G107200 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
2 Sobic.001G451300 NUP155, putative, expressed K14312: NUP155, NUP170, nuclear pore complex protein Nup155
3 Sobic.001G501800 ZOS1-20 - C2H2 zinc finger protein, expressed -
4 Sobic.002G399800 PWWP domain containing protein, expressed -
5 Sobic.010G262100 expressed protein -
6 Sobic.006G269800 TFIIH basal transcription factor complex p52 subunit, putative, expressed K03144: TFIIH4, GTF2H4, transcription initiation factor TFIIH subunit 4
7 Sobic.003G309050 - -
8 Sobic.002G425500 ATPOT1, putative, expressed -
9 Sobic.001G393900 FAD binding domain containing protein, expressed -
10 Sobic.007G171100 peptidylprolyl isomerase domain and WD repeat-containing protein 1, putative, expressed K12736: peptidylprolyl isomerase domain and WD repeat-containing protein 1
11 Sobic.006G119400 SWIM zinc finger family protein, putative, expressed -
12 Sobic.010G053600 pre-mRNA-processing-splicing factor 8, putative, expressed K12856: PRPF8, pre-mRNA-processing factor 8
13 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
14 Sobic.001G346900 RNA cap guanine-N2 methyltransferase domain containing protein, expressed K14292: trimethylguanosine synthase
15 Sobic.003G052800 RST1, putative, expressed -
16 Sobic.010G174700 expressed protein -
17 Sobic.008G002500 RCD1, putative, expressed -
18 Sobic.006G040800 expressed protein -
19 Sobic.010G094700 aberrant root formation protein 4, putative, expressed -
20 Sobic.002G145800 flowering time control protein FCA, putative, expressed -


Gene co-expression network
sample Sobic002G043100 Sobic002G043100 Sobic004G107200 Sobic004G107200 Sobic002G043100--Sobic004G107200 Sobic001G451300 Sobic001G451300 Sobic002G043100--Sobic001G451300 Sobic001G501800 Sobic001G501800 Sobic002G043100--Sobic001G501800 Sobic002G399800 Sobic002G399800 Sobic002G043100--Sobic002G399800 Sobic010G262100 Sobic010G262100 Sobic002G043100--Sobic010G262100 Sobic006G269800 Sobic006G269800 Sobic002G043100--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic002G043100--Sobic003G309050 Sobic002G425500 Sobic002G425500 Sobic002G043100--Sobic002G425500 Sobic001G393900 Sobic001G393900 Sobic002G043100--Sobic001G393900 Sobic002G431400 Sobic002G431400 Sobic004G107200--Sobic002G431400 Sobic004G107200--Sobic002G425500 Sobic006G119400 Sobic006G119400 Sobic004G107200--Sobic006G119400 Sobic003G101500 Sobic003G101500 Sobic004G107200--Sobic003G101500 Sobic004G107200--Sobic002G043100 Sobic004G107200--Sobic001G501800 Sobic001G456900 Sobic001G456900 Sobic004G107200--Sobic001G456900 Sobic001G261900 Sobic001G261900 Sobic004G107200--Sobic001G261900 Sobic004G107200--Sobic006G269800 Sobic001G451300--Sobic010G262100 Sobic004G034700 Sobic004G034700 Sobic001G451300--Sobic004G034700 Sobic010G138900 Sobic010G138900 Sobic001G451300--Sobic010G138900 Sobic001G451300--Sobic002G043100 Sobic001G451300--Sobic003G309050 Sobic010G174700 Sobic010G174700 Sobic001G451300--Sobic010G174700 Sobic002G371600 Sobic002G371600 Sobic001G451300--Sobic002G371600 Sobic009G142000 Sobic009G142000 Sobic001G451300--Sobic009G142000 Sobic001G451300--Sobic002G399800 Sobic001G501800--Sobic002G043100 Sobic001G501800--Sobic004G107200 Sobic005G200800 Sobic005G200800 Sobic001G501800--Sobic005G200800 Sobic001G501800--Sobic002G425500 Sobic003G409200 Sobic003G409200 Sobic001G501800--Sobic003G409200 Sobic001G063700 Sobic001G063700 Sobic001G501800--Sobic001G063700 Sobic001G501800--Sobic003G101500 Sobic003G360400 Sobic003G360400 Sobic001G501800--Sobic003G360400 Sobic001G346900 Sobic001G346900 Sobic001G501800--Sobic001G346900 Sobic003G095900 Sobic003G095900 Sobic002G399800--Sobic003G095900 Sobic003G260400 Sobic003G260400 Sobic002G399800--Sobic003G260400 Sobic010G079500 Sobic010G079500 Sobic002G399800--Sobic010G079500 Sobic004G248600 Sobic004G248600 Sobic002G399800--Sobic004G248600 Sobic002G179400 Sobic002G179400 Sobic002G399800--Sobic002G179400 Sobic002G133300 Sobic002G133300 Sobic002G399800--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic002G399800--Sobic001G089600 Sobic002G399800--Sobic001G393900 Sobic009G109200 Sobic009G109200 Sobic002G399800--Sobic009G109200 Sobic010G262100--Sobic001G451300 Sobic010G262100--Sobic010G138900 Sobic001G248100 Sobic001G248100 Sobic010G262100--Sobic001G248100 Sobic008G080500 Sobic008G080500 Sobic010G262100--Sobic008G080500 Sobic010G262100--Sobic002G043100 Sobic010G262100--Sobic002G399800 Sobic010G262100--Sobic002G371600 Sobic003G314700 Sobic003G314700 Sobic010G262100--Sobic003G314700 Sobic008G092800 Sobic008G092800 Sobic010G262100--Sobic008G092800 Sobic002G145800 Sobic002G145800 Sobic006G269800--Sobic002G145800 Sobic003G052800 Sobic003G052800 Sobic006G269800--Sobic003G052800 Sobic008G147200 Sobic008G147200 Sobic006G269800--Sobic008G147200 Sobic008G017100 Sobic008G017100 Sobic006G269800--Sobic008G017100 Sobic006G269800--Sobic001G393900 Sobic006G269800--Sobic002G043100 Sobic001G417500 Sobic001G417500 Sobic006G269800--Sobic001G417500 Sobic006G269800--Sobic004G107200 Sobic006G269800--Sobic002G425500 Sobic003G309050--Sobic001G451300 Sobic003G309050--Sobic001G393900 Sobic003G309050--Sobic002G043100 Sobic003G309050--Sobic002G399800 Sobic003G309050--Sobic002G371600 Sobic006G245900 Sobic006G245900 Sobic003G309050--Sobic006G245900 Sobic003G309050--Sobic001G417500 Sobic003G309050--Sobic003G260400 Sobic003G309050--Sobic010G262100 Sobic001G020000 Sobic001G020000 Sobic002G425500--Sobic001G020000 Sobic001G155400 Sobic001G155400 Sobic002G425500--Sobic001G155400 Sobic003G188400 Sobic003G188400 Sobic002G425500--Sobic003G188400 Sobic002G425500--Sobic004G107200 Sobic007G183900 Sobic007G183900 Sobic002G425500--Sobic007G183900 Sobic004G185800 Sobic004G185800 Sobic002G425500--Sobic004G185800 Sobic001G227200 Sobic001G227200 Sobic002G425500--Sobic001G227200 Sobic008G002500 Sobic008G002500 Sobic002G425500--Sobic008G002500 Sobic004G155600 Sobic004G155600 Sobic002G425500--Sobic004G155600 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G393900--Sobic001G089600 Sobic001G393900--Sobic002G399800 Sobic004G096400 Sobic004G096400 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic001G393900--Sobic006G269800 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400
Octagon: transcription factors


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