Gene annotation
Transcriptome id Sobic.010G094700.4,Sobic.010G094700.1,Sobic.010G094700.3,Sobic.010G094700.2
Synonym ALF4
Functional annotation aberrant root formation protein 4, putative, expressed
UniProt A0A1W0VS56 , A0A194YI80 , A0A194YI61 , A0A1W0VS59
Pfam PF08568
Panther DB PTHR15430 PTHR15430:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G11030 : aberrant lateral root formation 4
RAP-DB (Rice) LOC_Os08g19320.1 : aberrant root formation protein 4, putative, expressed
MaizeGDB (Corn) Zm00025a004105
Brachypodium PNT67052 , KQJ95954
Barley HORVU7Hr1G028950.19 , HORVU7Hr1G028950.18 , HORVU7Hr1G028950.11 , HORVU7Hr1G028950.10 , HORVU7Hr1G028950.13 , HORVU7Hr1G028950.12 , HORVU7Hr1G028950.15 , HORVU7Hr1G028950.14 , HORVU7Hr1G028950.17 , HORVU7Hr1G028950.16 , HORVU7Hr1G028950.9 , HORVU7Hr1G028950.8 , HORVU7Hr1G028950.5 , HORVU7Hr1G028950.4 , HORVU7Hr1G028950.7 , HORVU7Hr1G028950.6 , HORVU7Hr1G028950.1 , HORVU7Hr1G028950.3 , HORVU7Hr1G028950.2 , HORVU7Hr1G028950.24 , HORVU7Hr1G028950.20 , HORVU7Hr1G028950.21 , HORVU7Hr1G028950.22 , HORVU7Hr1G028950.23
Wheat TraesCS7B02G044400 , TraesCS7A02G141600 , TraesCS7A02G141600 , TraesCS7A02G141600 , TraesCS7A02G141600 , TraesCS7D02G142900 , TraesCS7D02G142900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G191900 transporter family protein, putative, expressed -
2 Sobic.009G109200 phosphatidylinositol kinase, putative, expressed K07203: MTOR, FRAP, serine/threonine-protein kinase mTOR
3 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
4 Sobic.010G079500 PHD-finger domain containing protein, putative, expressed -
5 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
6 Sobic.004G096400 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
7 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
8 Sobic.008G132900 expressed protein -
9 Sobic.001G393900 FAD binding domain containing protein, expressed -
10 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
11 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
12 Sobic.002G317200 uncharacterized ACR, COG1590 family protein, expressed K15450: tRNA wybutosine-synthesizing protein 3
13 Sobic.001G542400 CCR4-Not complex component, Not1domain containing protein, expressed K12604: CNOT1, CCR4-NOT transcription complex subunit 1
14 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
15 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
16 Sobic.010G001100 chromo domain containing protein, expressed -
17 Sobic.007G157000 protein transport protein, putative, expressed K14006: protein transport protein SEC23
18 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
19 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
20 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1


Gene co-expression network
sample Sobic010G094700 Sobic010G094700 Sobic005G191900 Sobic005G191900 Sobic010G094700--Sobic005G191900 Sobic009G109200 Sobic009G109200 Sobic010G094700--Sobic009G109200 Sobic010G279450 Sobic010G279450 Sobic010G094700--Sobic010G279450 Sobic010G079500 Sobic010G079500 Sobic010G094700--Sobic010G079500 Sobic001G529600 Sobic001G529600 Sobic010G094700--Sobic001G529600 Sobic004G096400 Sobic004G096400 Sobic010G094700--Sobic004G096400 Sobic001G311500 Sobic001G311500 Sobic010G094700--Sobic001G311500 Sobic008G132900 Sobic008G132900 Sobic010G094700--Sobic008G132900 Sobic001G393900 Sobic001G393900 Sobic010G094700--Sobic001G393900 Sobic005G191900--Sobic001G311500 Sobic001G363500 Sobic001G363500 Sobic005G191900--Sobic001G363500 Sobic005G191900--Sobic010G094700 Sobic009G247400 Sobic009G247400 Sobic005G191900--Sobic009G247400 Sobic010G112100 Sobic010G112100 Sobic005G191900--Sobic010G112100 Sobic007G157000 Sobic007G157000 Sobic005G191900--Sobic007G157000 Sobic006G118700 Sobic006G118700 Sobic005G191900--Sobic006G118700 Sobic008G028700 Sobic008G028700 Sobic005G191900--Sobic008G028700 Sobic008G002500 Sobic008G002500 Sobic005G191900--Sobic008G002500 Sobic010G105200 Sobic010G105200 Sobic009G109200--Sobic010G105200 Sobic004G242400 Sobic004G242400 Sobic009G109200--Sobic004G242400 Sobic002G397500 Sobic002G397500 Sobic009G109200--Sobic002G397500 Sobic001G542400 Sobic001G542400 Sobic009G109200--Sobic001G542400 Sobic001G540400 Sobic001G540400 Sobic009G109200--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic009G109200--Sobic005G008800 Sobic004G276400 Sobic004G276400 Sobic009G109200--Sobic004G276400 Sobic003G408600 Sobic003G408600 Sobic009G109200--Sobic003G408600 Sobic009G109200--Sobic010G112100 Sobic005G112300 Sobic005G112300 Sobic010G279450--Sobic005G112300 Sobic010G139000 Sobic010G139000 Sobic010G279450--Sobic010G139000 Sobic002G405800 Sobic002G405800 Sobic010G279450--Sobic002G405800 Sobic004G314000 Sobic004G314000 Sobic010G279450--Sobic004G314000 Sobic003G059750 Sobic003G059750 Sobic010G279450--Sobic003G059750 Sobic010G279450--Sobic008G028700 Sobic010G279450--Sobic001G363500 Sobic004G009600 Sobic004G009600 Sobic010G279450--Sobic004G009600 Sobic010G247800 Sobic010G247800 Sobic010G279450--Sobic010G247800 Sobic010G079500--Sobic001G529600 Sobic002G316600 Sobic002G316600 Sobic010G079500--Sobic002G316600 Sobic010G079500--Sobic009G109200 Sobic001G230000 Sobic001G230000 Sobic010G079500--Sobic001G230000 Sobic006G119400 Sobic006G119400 Sobic010G079500--Sobic006G119400 Sobic001G527800 Sobic001G527800 Sobic010G079500--Sobic001G527800 Sobic003G196300 Sobic003G196300 Sobic010G079500--Sobic003G196300 Sobic010G079500--Sobic008G132900 Sobic003G260400 Sobic003G260400 Sobic010G079500--Sobic003G260400 Sobic001G529600--Sobic002G316600 Sobic001G529600--Sobic010G079500 Sobic003G166750 Sobic003G166750 Sobic001G529600--Sobic003G166750 Sobic001G529600--Sobic009G109200 Sobic001G542500 Sobic001G542500 Sobic001G529600--Sobic001G542500 Sobic001G289800 Sobic001G289800 Sobic001G529600--Sobic001G289800 Sobic007G063000 Sobic007G063000 Sobic001G529600--Sobic007G063000 Sobic001G529600--Sobic005G008800 Sobic005G122700 Sobic005G122700 Sobic001G529600--Sobic005G122700 Sobic006G234700 Sobic006G234700 Sobic004G096400--Sobic006G234700 Sobic009G192300 Sobic009G192300 Sobic004G096400--Sobic009G192300 Sobic010G059500 Sobic010G059500 Sobic004G096400--Sobic010G059500 Sobic001G493200 Sobic001G493200 Sobic004G096400--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic004G096400--Sobic009G084900 Sobic001G433800 Sobic001G433800 Sobic004G096400--Sobic001G433800 Sobic003G249600 Sobic003G249600 Sobic004G096400--Sobic003G249600 Sobic006G077200 Sobic006G077200 Sobic004G096400--Sobic006G077200 Sobic007G132100 Sobic007G132100 Sobic004G096400--Sobic007G132100 Sobic001G311500--Sobic010G139000 Sobic001G311500--Sobic009G247400 Sobic001G311500--Sobic005G112300 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic001G311500--Sobic004G314000 Sobic001G311500--Sobic010G279450 Sobic001G311500--Sobic008G028700 Sobic001G311500--Sobic001G363500 Sobic009G256300 Sobic009G256300 Sobic008G132900--Sobic009G256300 Sobic008G132900--Sobic009G109200 Sobic001G400500 Sobic001G400500 Sobic008G132900--Sobic001G400500 Sobic008G132900--Sobic010G079500 Sobic008G132900--Sobic010G112100 Sobic008G132900--Sobic001G542400 Sobic008G132900--Sobic010G105200 Sobic008G132900--Sobic010G094700 Sobic010G001100 Sobic010G001100 Sobic008G132900--Sobic010G001100 Sobic004G321700 Sobic004G321700 Sobic001G393900--Sobic004G321700 Sobic006G267600 Sobic006G267600 Sobic001G393900--Sobic006G267600 Sobic001G089600 Sobic001G089600 Sobic001G393900--Sobic001G089600 Sobic002G399800 Sobic002G399800 Sobic001G393900--Sobic002G399800 Sobic001G393900--Sobic004G096400 Sobic007G173500 Sobic007G173500 Sobic001G393900--Sobic007G173500 Sobic006G269800 Sobic006G269800 Sobic001G393900--Sobic006G269800 Sobic003G309050 Sobic003G309050 Sobic001G393900--Sobic003G309050 Sobic003G042400 Sobic003G042400 Sobic001G393900--Sobic003G042400
Octagon: transcription factors


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