Gene annotation
Transcriptome id Sobic.007G212300.2,Sobic.007G212300.1
Synonym Sb07g027950
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1Z5RBU1 , C5YIU6
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF369
NCBI CDD KOG3702; Nuclear polyadenylated RNA binding protein
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G12640 : RNA binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g39440.2 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a033799 , Zm00025a005063
Brachypodium KQJ98898
Barley HORVU7Hr1G050300.3 , HORVU7Hr1G050300.2 , HORVU7Hr1G050300.1 , HORVU7Hr1G050300.6 , HORVU7Hr1G050300.5 , HORVU7Hr1G050300.4
Wheat TraesCS7B02G146300 , TraesCS7A02G245200 , TraesCS7D02G243800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G194500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
2 Sobic.004G314000 expressed protein -
3 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
4 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
5 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
7 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
8 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
9 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
10 Sobic.001G529600 1,3-beta-glucan synthase component domain containing protein, expressed K11000: callose synthase
11 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
12 Sobic.006G096900 expressed protein -
13 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
14 Sobic.001G261900 caffeine-induced death protein 1, putative, expressed -
15 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
16 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
17 Sobic.007G173500 growth regulator related protein, putative, expressed -
18 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
19 Sobic.010G140400 poor homologous synapsis 1 protein, putative, expressed -
20 Sobic.002G154000 EDM2, putative, expressed -


Gene co-expression network
sample Sobic007G212300 Sobic007G212300 Sobic003G194500 Sobic003G194500 Sobic007G212300--Sobic003G194500 Sobic004G314000 Sobic004G314000 Sobic007G212300--Sobic004G314000 Sobic005G064000 Sobic005G064000 Sobic007G212300--Sobic005G064000 Sobic003G360400 Sobic003G360400 Sobic007G212300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic007G212300--Sobic003G095900 Sobic001G227400 Sobic001G227400 Sobic007G212300--Sobic001G227400 Sobic007G105100 Sobic007G105100 Sobic007G212300--Sobic007G105100 Sobic005G008800 Sobic005G008800 Sobic007G212300--Sobic005G008800 Sobic001G154900 Sobic001G154900 Sobic007G212300--Sobic001G154900 Sobic003G194500--Sobic007G212300 Sobic004G023100 Sobic004G023100 Sobic003G194500--Sobic004G023100 Sobic001G088100 Sobic001G088100 Sobic003G194500--Sobic001G088100 Sobic003G194500--Sobic001G227400 Sobic002G380200 Sobic002G380200 Sobic003G194500--Sobic002G380200 Sobic001G493200 Sobic001G493200 Sobic003G194500--Sobic001G493200 Sobic003G266001 Sobic003G266001 Sobic003G194500--Sobic003G266001 Sobic003G194500--Sobic004G314000 Sobic008G118200 Sobic008G118200 Sobic003G194500--Sobic008G118200 Sobic010G139000 Sobic010G139000 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic010G206900 Sobic010G206900 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic008G113100 Sobic008G113100 Sobic005G064000--Sobic008G113100 Sobic010G112100 Sobic010G112100 Sobic005G064000--Sobic010G112100 Sobic002G264200 Sobic002G264200 Sobic005G064000--Sobic002G264200 Sobic007G159900 Sobic007G159900 Sobic005G064000--Sobic007G159900 Sobic007G065400 Sobic007G065400 Sobic005G064000--Sobic007G065400 Sobic010G069100 Sobic010G069100 Sobic005G064000--Sobic010G069100 Sobic005G064000--Sobic003G360400 Sobic006G118700 Sobic006G118700 Sobic005G064000--Sobic006G118700 Sobic002G154000 Sobic002G154000 Sobic005G064000--Sobic002G154000 Sobic003G360400--Sobic010G112100 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic001G433800 Sobic001G433800 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic009G044800 Sobic009G044800 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic009G256400 Sobic009G256400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G227400--Sobic001G289800 Sobic007G105100--Sobic005G112300 Sobic001G289600 Sobic001G289600 Sobic007G105100--Sobic001G289600 Sobic003G408600 Sobic003G408600 Sobic007G105100--Sobic003G408600 Sobic010G010700 Sobic010G010700 Sobic007G105100--Sobic010G010700 Sobic007G062800 Sobic007G062800 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic001G540400 Sobic001G540400 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic007G105100--Sobic010G112100 Sobic005G008800--Sobic001G540400 Sobic005G008800--Sobic003G408600 Sobic005G008800--Sobic005G112300 Sobic005G008800--Sobic007G062800 Sobic005G008800--Sobic001G289600 Sobic005G008800--Sobic004G314000 Sobic008G009700 Sobic008G009700 Sobic005G008800--Sobic008G009700 Sobic005G008800--Sobic001G289800 Sobic009G109200 Sobic009G109200 Sobic005G008800--Sobic009G109200 Sobic001G154900--Sobic002G309600 Sobic001G154900--Sobic001G289600 Sobic001G241200 Sobic001G241200 Sobic001G154900--Sobic001G241200 Sobic001G154900--Sobic010G069100 Sobic001G154900--Sobic005G008800 Sobic007G117400 Sobic007G117400 Sobic001G154900--Sobic007G117400 Sobic004G065100 Sobic004G065100 Sobic001G154900--Sobic004G065100 Sobic004G009600 Sobic004G009600 Sobic001G154900--Sobic004G009600 Sobic001G154900--Sobic007G105100
Octagon: transcription factors


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