Gene annotation
Transcriptome id Sobic.003G194500.1
Synonym emb1789, Sb03g025780
Functional annotation zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
UniProt C5XNS1
Pfam PF00642
Panther DB PTHR13119
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G56930 : CCCH-type zinc finger family protein
RAP-DB (Rice) LOC_Os01g39100.1 : zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
MaizeGDB (Corn) Zm00025a028448
Brachypodium -
Barley -
Wheat TraesCS3D02G209700 , TraesCS3A02G205900 , TraesCS3B02G237800
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
2 Sobic.004G023100 protein binding protein, putative, expressed -
3 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
4 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
5 Sobic.002G380200 calmodulin-binding transcription activator, putative, expressed -
6 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
7 Sobic.003G266001 - -
8 Sobic.004G314000 expressed protein -
9 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
10 Sobic.001G241200 protein kinase domain containing protein, expressed -
11 Sobic.001G261501 - -
12 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
13 Sobic.007G009700 nucleic acid binding protein, putative, expressed K12839: SMNDC1, survival of motor neuron-related-splicing factor 30
14 Sobic.010G185400 HEAT repeat family protein, putative, expressed K03456: serine/threonine-protein phosphatase 2A regulatory subunit A
15 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
16 Sobic.010G078900 transcription elongation factor SPT5 homolog 1, putative, expressed K15172: SUPT5H, transcription elongation factor SPT5
17 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
18 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5
19 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
20 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic003G194500 Sobic003G194500 Sobic007G212300 Sobic007G212300 Sobic003G194500--Sobic007G212300 Sobic004G023100 Sobic004G023100 Sobic003G194500--Sobic004G023100 Sobic001G088100 Sobic001G088100 Sobic003G194500--Sobic001G088100 Sobic001G227400 Sobic001G227400 Sobic003G194500--Sobic001G227400 Sobic002G380200 Sobic002G380200 Sobic003G194500--Sobic002G380200 Sobic001G493200 Sobic001G493200 Sobic003G194500--Sobic001G493200 Sobic003G266001 Sobic003G266001 Sobic003G194500--Sobic003G266001 Sobic004G314000 Sobic004G314000 Sobic003G194500--Sobic004G314000 Sobic008G118200 Sobic008G118200 Sobic003G194500--Sobic008G118200 Sobic007G212300--Sobic003G194500 Sobic007G212300--Sobic004G314000 Sobic005G064000 Sobic005G064000 Sobic007G212300--Sobic005G064000 Sobic003G360400 Sobic003G360400 Sobic007G212300--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic007G212300--Sobic003G095900 Sobic007G212300--Sobic001G227400 Sobic007G105100 Sobic007G105100 Sobic007G212300--Sobic007G105100 Sobic005G008800 Sobic005G008800 Sobic007G212300--Sobic005G008800 Sobic001G154900 Sobic001G154900 Sobic007G212300--Sobic001G154900 Sobic001G542500 Sobic001G542500 Sobic004G023100--Sobic001G542500 Sobic008G085300 Sobic008G085300 Sobic004G023100--Sobic008G085300 Sobic002G397500 Sobic002G397500 Sobic004G023100--Sobic002G397500 Sobic004G040500 Sobic004G040500 Sobic004G023100--Sobic004G040500 Sobic004G291900 Sobic004G291900 Sobic004G023100--Sobic004G291900 Sobic009G109200 Sobic009G109200 Sobic004G023100--Sobic009G109200 Sobic001G287500 Sobic001G287500 Sobic004G023100--Sobic001G287500 Sobic001G002000 Sobic001G002000 Sobic004G023100--Sobic001G002000 Sobic010G223100 Sobic010G223100 Sobic004G023100--Sobic010G223100 Sobic009G005500 Sobic009G005500 Sobic001G088100--Sobic009G005500 Sobic007G119200 Sobic007G119200 Sobic001G088100--Sobic007G119200 Sobic010G069100 Sobic010G069100 Sobic001G088100--Sobic010G069100 Sobic010G236400 Sobic010G236400 Sobic001G088100--Sobic010G236400 Sobic003G394300 Sobic003G394300 Sobic001G088100--Sobic003G394300 Sobic001G088100--Sobic007G105100 Sobic001G241200 Sobic001G241200 Sobic001G088100--Sobic001G241200 Sobic004G274200 Sobic004G274200 Sobic001G088100--Sobic004G274200 Sobic003G408600 Sobic003G408600 Sobic001G088100--Sobic003G408600 Sobic009G044800 Sobic009G044800 Sobic001G227400--Sobic009G044800 Sobic007G218000 Sobic007G218000 Sobic001G227400--Sobic007G218000 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic001G261501 Sobic001G261501 Sobic002G380200--Sobic001G261501 Sobic002G380200--Sobic003G408600 Sobic002G380200--Sobic009G109200 Sobic002G380200--Sobic005G008800 Sobic003G214600 Sobic003G214600 Sobic002G380200--Sobic003G214600 Sobic001G498600 Sobic001G498600 Sobic002G380200--Sobic001G498600 Sobic001G146800 Sobic001G146800 Sobic002G380200--Sobic001G146800 Sobic007G163100 Sobic007G163100 Sobic002G380200--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic002G380200--Sobic010G112100 Sobic001G493200--Sobic009G084900 Sobic001G493200--Sobic003G266001 Sobic010G059500 Sobic010G059500 Sobic001G493200--Sobic010G059500 Sobic001G433800 Sobic001G433800 Sobic001G493200--Sobic001G433800 Sobic004G072100 Sobic004G072100 Sobic001G493200--Sobic004G072100 Sobic004G096400 Sobic004G096400 Sobic001G493200--Sobic004G096400 Sobic007G132100 Sobic007G132100 Sobic001G493200--Sobic007G132100 Sobic006G077200 Sobic006G077200 Sobic001G493200--Sobic006G077200 Sobic001G493200--Sobic003G408600 Sobic003G266001--Sobic001G493200 Sobic005G128400 Sobic005G128400 Sobic003G266001--Sobic005G128400 Sobic008G103200 Sobic008G103200 Sobic003G266001--Sobic008G103200 Sobic003G266001--Sobic010G069100 Sobic003G266001--Sobic003G408600 Sobic003G266001--Sobic004G072100 Sobic004G021200 Sobic004G021200 Sobic003G266001--Sobic004G021200 Sobic001G311500 Sobic001G311500 Sobic003G266001--Sobic001G311500 Sobic007G159900 Sobic007G159900 Sobic003G266001--Sobic007G159900 Sobic010G139000 Sobic010G139000 Sobic004G314000--Sobic010G139000 Sobic004G314000--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic004G314000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic004G314000--Sobic010G279450 Sobic004G242400 Sobic004G242400 Sobic004G314000--Sobic004G242400 Sobic010G206900 Sobic010G206900 Sobic004G314000--Sobic010G206900 Sobic003G401600 Sobic003G401600 Sobic004G314000--Sobic003G401600 Sobic002G309600 Sobic002G309600 Sobic004G314000--Sobic002G309600 Sobic009G040600 Sobic009G040600 Sobic004G314000--Sobic009G040600 Sobic008G118200--Sobic007G163100 Sobic008G118200--Sobic010G069100 Sobic008G118200--Sobic003G408600 Sobic008G118200--Sobic009G044800 Sobic008G118200--Sobic010G112100 Sobic008G118200--Sobic005G112300 Sobic001G207000 Sobic001G207000 Sobic008G118200--Sobic001G207000 Sobic001G289600 Sobic001G289600 Sobic008G118200--Sobic001G289600 Sobic008G118200--Sobic007G105100
Octagon: transcription factors


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