Gene annotation
Transcriptome id Sobic.003G074200.2,Sobic.003G074200.1
Synonym ARP5, ATARP5, Sb03g006260
Functional annotation actin, putative, expressed
UniProt C5XQ23 , A0A1B6Q1V0
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF16
NCBI CDD KOG0681; Actin-related protein - Arp5p
KEGG Orthology K11672; ACTR5, ARP5, actin-related protein 5
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT3G12380 : actin-related protein 5
RAP-DB (Rice) LOC_Os05g01600.2 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a035615
Brachypodium KQK02667 , KQK02668
Barley HORVU3Hr1G012150.7 , HORVU3Hr1G012150.12 , HORVU3Hr1G012150.10 , HORVU3Hr1G012150.11 , HORVU3Hr1G012150.8 , HORVU3Hr1G012150.9 , HORVU3Hr1G012150.4 , HORVU3Hr1G012150.6 , HORVU3Hr1G012150.1 , HORVU3Hr1G012150.2 , HORVU3Hr1G012150.5 , HORVU3Hr1G012150.3
Wheat TraesCS3A02G065100 , TraesCS3A02G065100 , TraesCS3B02G078600 , TraesCS3D02G065800
Populus -


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cDNA sequences
Sobic.003G074200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G168300 UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY, putative, expressed -
2 Sobic.003G062300 NF-X1-type zinc finger protein, putative, expressed K15683: NFXL1, NF-X1-type zinc finger protein NFXL1
3 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
4 Sobic.003G194500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
5 Sobic.004G236800 MAG2, putative, expressed -
6 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
7 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
8 Sobic.006G210000 zinc finger domain, LSD1 subclass family protein, expressed -
9 Sobic.003G042400 - K12598: MTR4, ATP-dependent RNA helicase DOB1
10 Sobic.007G183300 expressed protein -
11 Sobic.007G212300 RNA recognition motif containing protein, putative, expressed -
12 Sobic.009G126300 RING E3 ligase protein, putative, expressed K16279: E3 ubiquitin-protein ligase KEG
13 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
14 Sobic.010G001100 chromo domain containing protein, expressed -
15 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
16 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
17 Sobic.010G279900 PHD-finger domain containing protein, expressed -
18 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
19 Sobic.010G114900 expressed protein -
20 Sobic.010G187600 26S protease regulatory subunit S10B, putative, expressed K03064: PSMC6, 26S proteasome regulatory subunit T4


Gene co-expression network
sample Sobic003G074200 Sobic003G074200 Sobic007G168300 Sobic007G168300 Sobic003G074200--Sobic007G168300 Sobic003G062300 Sobic003G062300 Sobic003G074200--Sobic003G062300 Sobic004G309900 Sobic004G309900 Sobic003G074200--Sobic004G309900 Sobic003G194500 Sobic003G194500 Sobic003G074200--Sobic003G194500 Sobic004G236800 Sobic004G236800 Sobic003G074200--Sobic004G236800 Sobic001G008200 Sobic001G008200 Sobic003G074200--Sobic001G008200 Sobic003G405500 Sobic003G405500 Sobic003G074200--Sobic003G405500 Sobic006G210000 Sobic006G210000 Sobic003G074200--Sobic006G210000 Sobic003G042400 Sobic003G042400 Sobic003G074200--Sobic003G042400 Sobic007G168300--Sobic003G042400 Sobic005G200800 Sobic005G200800 Sobic007G168300--Sobic005G200800 Sobic010G001100 Sobic010G001100 Sobic007G168300--Sobic010G001100 Sobic002G154000 Sobic002G154000 Sobic007G168300--Sobic002G154000 Sobic009G126300 Sobic009G126300 Sobic007G168300--Sobic009G126300 Sobic007G183300 Sobic007G183300 Sobic007G168300--Sobic007G183300 Sobic001G453000 Sobic001G453000 Sobic007G168300--Sobic001G453000 Sobic001G376900 Sobic001G376900 Sobic007G168300--Sobic001G376900 Sobic005G200900 Sobic005G200900 Sobic007G168300--Sobic005G200900 Sobic006G224800 Sobic006G224800 Sobic003G062300--Sobic006G224800 Sobic003G062300--Sobic004G309900 Sobic002G145800 Sobic002G145800 Sobic003G062300--Sobic002G145800 Sobic003G416700 Sobic003G416700 Sobic003G062300--Sobic003G416700 Sobic005G220000 Sobic005G220000 Sobic003G062300--Sobic005G220000 Sobic001G051700 Sobic001G051700 Sobic003G062300--Sobic001G051700 Sobic002G164200 Sobic002G164200 Sobic003G062300--Sobic002G164200 Sobic003G214600 Sobic003G214600 Sobic003G062300--Sobic003G214600 Sobic003G062300--Sobic007G183300 Sobic003G133900 Sobic003G133900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic004G309900--Sobic003G062300 Sobic006G077200 Sobic006G077200 Sobic004G309900--Sobic006G077200 Sobic004G096400 Sobic004G096400 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic004G309900--Sobic006G210000 Sobic004G309900--Sobic003G416700 Sobic004G309900--Sobic001G008200 Sobic007G212300 Sobic007G212300 Sobic003G194500--Sobic007G212300 Sobic004G023100 Sobic004G023100 Sobic003G194500--Sobic004G023100 Sobic001G088100 Sobic001G088100 Sobic003G194500--Sobic001G088100 Sobic001G227400 Sobic001G227400 Sobic003G194500--Sobic001G227400 Sobic002G380200 Sobic002G380200 Sobic003G194500--Sobic002G380200 Sobic001G493200 Sobic001G493200 Sobic003G194500--Sobic001G493200 Sobic003G266001 Sobic003G266001 Sobic003G194500--Sobic003G266001 Sobic004G314000 Sobic004G314000 Sobic003G194500--Sobic004G314000 Sobic008G118200 Sobic008G118200 Sobic003G194500--Sobic008G118200 Sobic004G141800 Sobic004G141800 Sobic004G236800--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic004G236800--Sobic002G430300 Sobic004G236800--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic004G236800--Sobic003G152400 Sobic002G063900 Sobic002G063900 Sobic004G236800--Sobic002G063900 Sobic010G278600 Sobic010G278600 Sobic004G236800--Sobic010G278600 Sobic004G246100 Sobic004G246100 Sobic004G236800--Sobic004G246100 Sobic010G187600 Sobic010G187600 Sobic004G236800--Sobic010G187600 Sobic001G145400 Sobic001G145400 Sobic004G236800--Sobic001G145400 Sobic001G008200--Sobic004G309900 Sobic005G172500 Sobic005G172500 Sobic001G008200--Sobic005G172500 Sobic001G008200--Sobic001G227400 Sobic001G008200--Sobic001G493200 Sobic001G008200--Sobic003G133900 Sobic006G240100 Sobic006G240100 Sobic001G008200--Sobic006G240100 Sobic004G155600 Sobic004G155600 Sobic001G008200--Sobic004G155600 Sobic001G473600 Sobic001G473600 Sobic001G008200--Sobic001G473600 Sobic001G008200--Sobic001G145400 Sobic003G405500--Sobic001G145400 Sobic008G124800 Sobic008G124800 Sobic003G405500--Sobic008G124800 Sobic003G405500--Sobic002G430300 Sobic009G084900 Sobic009G084900 Sobic003G405500--Sobic009G084900 Sobic006G166200 Sobic006G166200 Sobic003G405500--Sobic006G166200 Sobic003G405500--Sobic004G141800 Sobic003G405500--Sobic006G077200 Sobic010G059500 Sobic010G059500 Sobic003G405500--Sobic010G059500 Sobic003G314700 Sobic003G314700 Sobic003G405500--Sobic003G314700 Sobic006G210000--Sobic010G001100 Sobic003G293200 Sobic003G293200 Sobic006G210000--Sobic003G293200 Sobic004G156500 Sobic004G156500 Sobic006G210000--Sobic004G156500 Sobic010G065300 Sobic010G065300 Sobic006G210000--Sobic010G065300 Sobic004G355800 Sobic004G355800 Sobic006G210000--Sobic004G355800 Sobic007G031600 Sobic007G031600 Sobic006G210000--Sobic007G031600 Sobic008G100100 Sobic008G100100 Sobic006G210000--Sobic008G100100 Sobic006G052300 Sobic006G052300 Sobic006G210000--Sobic006G052300 Sobic005G191900 Sobic005G191900 Sobic006G210000--Sobic005G191900 Sobic003G042400--Sobic007G168300 Sobic003G042400--Sobic001G376900 Sobic001G346900 Sobic001G346900 Sobic003G042400--Sobic001G346900 Sobic009G158100 Sobic009G158100 Sobic003G042400--Sobic009G158100 Sobic003G042400--Sobic001G145400 Sobic001G052400 Sobic001G052400 Sobic003G042400--Sobic001G052400 Sobic008G147200 Sobic008G147200 Sobic003G042400--Sobic008G147200 Sobic009G255600 Sobic009G255600 Sobic003G042400--Sobic009G255600 Sobic007G126500 Sobic007G126500 Sobic003G042400--Sobic007G126500
Octagon: transcription factors


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