Gene annotation
Transcriptome id Sobic.010G187600.1
Synonym Sb10g023770
Functional annotation 26S protease regulatory subunit S10B, putative, expressed
UniProt C5Z5Q3
Pfam PF05496
Panther DB PTHR23073 PTHR23073:SF34
NCBI CDD -
KEGG Orthology K03064; PSMC6, 26S proteasome regulatory subunit T4
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT1G45000 : AAA-type ATPase family protein
RAP-DB (Rice) LOC_Os06g40560.1 : 26S protease regulatory subunit S10B, putative, expressed
MaizeGDB (Corn) Zm00025a051332
Brachypodium -
Barley HORVU7Hr1G090380.11 , HORVU7Hr1G090380.10 , HORVU7Hr1G090380.7 , HORVU7Hr1G090380.6 , HORVU7Hr1G090380.5 , HORVU7Hr1G090380.4 , HORVU7Hr1G090380.3 , HORVU7Hr1G090380.2 , HORVU7Hr1G090380.1 , HORVU7Hr1G090380.9 , HORVU7Hr1G090380.8
Wheat TraesCS7D02G375500 , TraesCS7B02G280400 , TraesCS7A02G378600 , TraesCS7A02G378600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.010G187600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G236800 MAG2, putative, expressed -
2 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
3 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
4 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
5 Sobic.002G063900 zinc ion binding protein, putative, expressed -
6 Sobic.007G183300 expressed protein -
7 Sobic.010G055800 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
8 Sobic.003G214600 transcriptional corepressor LEUNIG, putative, expressed -
9 Sobic.004G309900 cold-induced protein, putative, expressed K13174: THO complex subunit 5
10 Sobic.001G008200 expressed protein K13211: GC-rich sequence DNA-binding factor
11 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
12 Sobic.001G275300 - K10899: ATP-dependent DNA helicase Q1
13 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
14 Sobic.007G000300 expressed protein -
15 Sobic.003G405500 mannosyl-oligosaccharide glucosidase, putative, expressed K01228: mannosyl-oligosaccharide glucosidase
16 Sobic.003G074200 actin, putative, expressed K11672: ACTR5, ARP5, actin-related protein 5
17 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
18 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
19 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
20 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6


Gene co-expression network
sample Sobic010G187600 Sobic010G187600 Sobic004G236800 Sobic004G236800 Sobic010G187600--Sobic004G236800 Sobic009G228000 Sobic009G228000 Sobic010G187600--Sobic009G228000 Sobic006G077200 Sobic006G077200 Sobic010G187600--Sobic006G077200 Sobic004G129300 Sobic004G129300 Sobic010G187600--Sobic004G129300 Sobic002G063900 Sobic002G063900 Sobic010G187600--Sobic002G063900 Sobic007G183300 Sobic007G183300 Sobic010G187600--Sobic007G183300 Sobic010G055800 Sobic010G055800 Sobic010G187600--Sobic010G055800 Sobic003G214600 Sobic003G214600 Sobic010G187600--Sobic003G214600 Sobic004G309900 Sobic004G309900 Sobic010G187600--Sobic004G309900 Sobic004G141800 Sobic004G141800 Sobic004G236800--Sobic004G141800 Sobic002G430300 Sobic002G430300 Sobic004G236800--Sobic002G430300 Sobic003G405500 Sobic003G405500 Sobic004G236800--Sobic003G405500 Sobic003G152400 Sobic003G152400 Sobic004G236800--Sobic003G152400 Sobic004G236800--Sobic002G063900 Sobic010G278600 Sobic010G278600 Sobic004G236800--Sobic010G278600 Sobic004G246100 Sobic004G246100 Sobic004G236800--Sobic004G246100 Sobic004G236800--Sobic010G187600 Sobic001G145400 Sobic001G145400 Sobic004G236800--Sobic001G145400 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic009G084900 Sobic009G084900 Sobic006G077200--Sobic009G084900 Sobic010G185400 Sobic010G185400 Sobic006G077200--Sobic010G185400 Sobic010G059500 Sobic010G059500 Sobic006G077200--Sobic010G059500 Sobic006G077200--Sobic001G145400 Sobic001G493200 Sobic001G493200 Sobic006G077200--Sobic001G493200 Sobic003G249600 Sobic003G249600 Sobic006G077200--Sobic003G249600 Sobic008G082500 Sobic008G082500 Sobic006G077200--Sobic008G082500 Sobic003G189600 Sobic003G189600 Sobic006G077200--Sobic003G189600 Sobic004G096400 Sobic004G096400 Sobic006G077200--Sobic004G096400 Sobic010G237900 Sobic010G237900 Sobic004G129300--Sobic010G237900 Sobic007G191700 Sobic007G191700 Sobic004G129300--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic004G129300--Sobic001G002600 Sobic007G091600 Sobic007G091600 Sobic004G129300--Sobic007G091600 Sobic007G090430 Sobic007G090430 Sobic004G129300--Sobic007G090430 Sobic008G173100 Sobic008G173100 Sobic004G129300--Sobic008G173100 Sobic001G087600 Sobic001G087600 Sobic004G129300--Sobic001G087600 Sobic004G129300--Sobic007G183300 Sobic001G384300 Sobic001G384300 Sobic004G129300--Sobic001G384300 Sobic002G063900--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic002G063900--Sobic007G090430 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic002G145800 Sobic002G145800 Sobic007G183300--Sobic002G145800 Sobic003G416700 Sobic003G416700 Sobic007G183300--Sobic003G416700 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic002G154000 Sobic002G154000 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700 Sobic002G262700 Sobic002G262700 Sobic010G055800--Sobic002G262700 Sobic001G042200 Sobic001G042200 Sobic010G055800--Sobic001G042200 Sobic004G345400 Sobic004G345400 Sobic010G055800--Sobic004G345400 Sobic004G180900 Sobic004G180900 Sobic010G055800--Sobic004G180900 Sobic010G055800--Sobic010G187600 Sobic003G123000 Sobic003G123000 Sobic010G055800--Sobic003G123000 Sobic009G092400 Sobic009G092400 Sobic010G055800--Sobic009G092400 Sobic006G186400 Sobic006G186400 Sobic010G055800--Sobic006G186400 Sobic004G068500 Sobic004G068500 Sobic010G055800--Sobic004G068500 Sobic003G214600--Sobic005G200800 Sobic002G029100 Sobic002G029100 Sobic003G214600--Sobic002G029100 Sobic006G088200 Sobic006G088200 Sobic003G214600--Sobic006G088200 Sobic003G408600 Sobic003G408600 Sobic003G214600--Sobic003G408600 Sobic009G255600 Sobic009G255600 Sobic003G214600--Sobic009G255600 Sobic005G008800 Sobic005G008800 Sobic003G214600--Sobic005G008800 Sobic003G214600--Sobic007G183300 Sobic007G163100 Sobic007G163100 Sobic003G214600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic003G214600--Sobic003G360400 Sobic003G133900 Sobic003G133900 Sobic004G309900--Sobic003G133900 Sobic007G183900 Sobic007G183900 Sobic004G309900--Sobic007G183900 Sobic003G062300 Sobic003G062300 Sobic004G309900--Sobic003G062300 Sobic004G309900--Sobic006G077200 Sobic004G309900--Sobic004G096400 Sobic002G366400 Sobic002G366400 Sobic004G309900--Sobic002G366400 Sobic006G210000 Sobic006G210000 Sobic004G309900--Sobic006G210000 Sobic004G309900--Sobic003G416700 Sobic001G008200 Sobic001G008200 Sobic004G309900--Sobic001G008200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.