Gene annotation
Transcriptome id Sobic.009G228000.1
Synonym Sb09g028100
Functional annotation ubiquitin-conjugating enzyme domain containing protein, expressed
UniProt C5YVG0
Pfam PF00179
Panther DB PTHR24067 PTHR24067:SF100
NCBI CDD KOG0417; Ubiquitin-protein ligase
KEGG Orthology K10581; ubiquitin-conjugating enzyme E2 O
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G53025 : Ubiquitin-conjugating enzyme family protein
RAP-DB (Rice) LOC_Os05g48380.1 : ubiquitin-conjugating enzyme domain containing protein, expressed
MaizeGDB (Corn) Zm00025a044521 , Zm00025a036568
Brachypodium KQK02851 , KQK04944 , KQK04945
Barley HORVU1Hr1G029800.14 , HORVU1Hr1G029800.10 , HORVU1Hr1G029800.11 , HORVU1Hr1G029800.12 , HORVU1Hr1G029800.13 , HORVU1Hr1G029800.6 , HORVU1Hr1G029800.2 , HORVU1Hr1G029800.3 , HORVU1Hr1G029800.1 , HORVU1Hr1G029800.8 , HORVU1Hr1G029800.9
Wheat TraesCS1A02G388000 , TraesCS1D02G396000 , TraesCS1D02G396000 , TraesCS3A02G269200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.009G228000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
2 Sobic.003G043000 expressed protein -
3 Sobic.004G240400 tRNA synthetase, putative, expressed -
4 Sobic.003G241700 SET domain containing protein, expressed -
5 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
6 Sobic.002G063900 zinc ion binding protein, putative, expressed -
7 Sobic.003G297500 glucosidase 2 subunit beta precursor, putative, expressed K08288: protein kinase C substrate 80K-H
8 Sobic.004G209700 FAR1 family protein, expressed -
9 Sobic.006G234700 FGGY family of carbohydrate kinases, putative, expressed -
10 Sobic.003G272700 transmembrane protein 16K, putative, expressed -
11 Sobic.004G357100 expressed protein -
12 Sobic.001G340300 tentative name(PubMedID : 31536532)@expressed protein -
13 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
14 Sobic.009G260650 - -
15 Sobic.010G226000 expressed protein -
16 Sobic.003G182300 zinc finger family protein, putative, expressed K16284: E3 ubiquitin-protein ligase SIS3
17 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
18 Sobic.004G265500 SET domain protein SDG117, putative, expressed -
19 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
20 Sobic.010G077500 protein of unknown function DUF1296 domain containing protein, expressed -


Gene co-expression network
sample Sobic009G228000 Sobic009G228000 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic004G240400 Sobic004G240400 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic009G107300--Sobic009G228000 Sobic007G087000 Sobic007G087000 Sobic009G107300--Sobic007G087000 Sobic009G107300--Sobic004G240400 Sobic008G116700 Sobic008G116700 Sobic009G107300--Sobic008G116700 Sobic009G107300--Sobic003G043000 Sobic004G198600 Sobic004G198600 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900 Sobic004G265500 Sobic004G265500 Sobic003G043000--Sobic004G265500 Sobic001G308400 Sobic001G308400 Sobic003G043000--Sobic001G308400 Sobic003G296900 Sobic003G296900 Sobic003G043000--Sobic003G296900 Sobic004G357100 Sobic004G357100 Sobic003G043000--Sobic004G357100 Sobic003G043000--Sobic003G241700 Sobic003G043000--Sobic009G228000 SobicK028600 SobicK028600 Sobic003G043000--SobicK028600 Sobic003G163200 Sobic003G163200 Sobic003G043000--Sobic003G163200 Sobic002G227500 Sobic002G227500 Sobic003G043000--Sobic002G227500 Sobic004G240400--Sobic009G228000 Sobic004G240400--Sobic004G198600 Sobic006G174850 Sobic006G174850 Sobic004G240400--Sobic006G174850 Sobic010G034100 Sobic010G034100 Sobic004G240400--Sobic010G034100 Sobic004G240400--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic004G240400--Sobic007G017800 Sobic004G240400--Sobic004G209700 Sobic005G062200 Sobic005G062200 Sobic004G240400--Sobic005G062200 Sobic004G240400--Sobic003G241700 Sobic003G241700--Sobic003G043000 Sobic003G241700--Sobic003G296900 Sobic003G241700--Sobic009G228000 Sobic003G241700--Sobic004G209700 Sobic003G241700--Sobic004G265500 Sobic010G000800 Sobic010G000800 Sobic003G241700--Sobic010G000800 Sobic003G241700--Sobic006G234700 Sobic004G213800 Sobic004G213800 Sobic003G241700--Sobic004G213800 Sobic003G241700--Sobic010G034100 Sobic003G379200 Sobic003G379200 Sobic003G363700--Sobic003G379200 Sobic001G237600 Sobic001G237600 Sobic003G363700--Sobic001G237600 Sobic003G363700--Sobic004G265500 Sobic002G371700 Sobic002G371700 Sobic003G363700--Sobic002G371700 Sobic003G363700--Sobic009G228000 Sobic002G374300 Sobic002G374300 Sobic003G363700--Sobic002G374300 Sobic003G363700--Sobic003G043000 Sobic003G363700--Sobic010G000800 Sobic003G182300 Sobic003G182300 Sobic003G363700--Sobic003G182300 Sobic008G173100 Sobic008G173100 Sobic002G063900--Sobic008G173100 Sobic006G116100 Sobic006G116100 Sobic002G063900--Sobic006G116100 Sobic002G063900--Sobic004G357100 Sobic002G260400 Sobic002G260400 Sobic002G063900--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic008G149800 Sobic008G149800 Sobic002G063900--Sobic008G149800 Sobic002G063900--SobicK028600 Sobic003G297500--Sobic009G228000 Sobic009G260650 Sobic009G260650 Sobic003G297500--Sobic009G260650 Sobic006G267600 Sobic006G267600 Sobic003G297500--Sobic006G267600 Sobic003G297500--Sobic001G308400 Sobic003G416700 Sobic003G416700 Sobic003G297500--Sobic003G416700 Sobic006G281700 Sobic006G281700 Sobic003G297500--Sobic006G281700 Sobic003G297500--Sobic009G107300 Sobic002G154000 Sobic002G154000 Sobic003G297500--Sobic002G154000 Sobic004G072200 Sobic004G072200 Sobic003G297500--Sobic004G072200 Sobic001G433800 Sobic001G433800 Sobic004G209700--Sobic001G433800 Sobic003G360400 Sobic003G360400 Sobic004G209700--Sobic003G360400 Sobic006G096900 Sobic006G096900 Sobic004G209700--Sobic006G096900 Sobic004G209700--Sobic002G154000 Sobic010G226000 Sobic010G226000 Sobic004G209700--Sobic010G226000 Sobic004G209700--Sobic003G241700 Sobic009G044800 Sobic009G044800 Sobic004G209700--Sobic009G044800 Sobic009G092400 Sobic009G092400 Sobic004G209700--Sobic009G092400 Sobic002G083500 Sobic002G083500 Sobic004G209700--Sobic002G083500 Sobic004G096400 Sobic004G096400 Sobic006G234700--Sobic004G096400 Sobic010G059500 Sobic010G059500 Sobic006G234700--Sobic010G059500 Sobic009G192300 Sobic009G192300 Sobic006G234700--Sobic009G192300 Sobic007G042400 Sobic007G042400 Sobic006G234700--Sobic007G042400 Sobic003G444800 Sobic003G444800 Sobic006G234700--Sobic003G444800 Sobic001G493200 Sobic001G493200 Sobic006G234700--Sobic001G493200 Sobic009G084900 Sobic009G084900 Sobic006G234700--Sobic009G084900 Sobic006G234700--Sobic001G433800 Sobic006G234700--Sobic002G083500
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.