Gene annotation
Transcriptome id Sobic.004G240400.2,Sobic.004G240400.1
Synonym
Functional annotation tRNA synthetase, putative, expressed
UniProt A0A194YRB9 , A0A194YRJ3
Pfam PF00579
Panther DB PTHR11946 PTHR11946:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006418; tRNA aminoacylation for protein translation GO:0005524ATP binding GO:0004812aminoacyl-tRNA ligase activity GO:0000166nucleotide binding


Orthologs (automatic annotation)
TAIR AT1G28350 : Nucleotidylyl transferase superfamily protein
RAP-DB (Rice) LOC_Os07g47860.1,LOC_Os08g05490.1 : tRNA synthetase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.004G240400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
2 Sobic.004G198600 cyclin G-associated kinase, putative, expressed K08853: AP2-associated kinase
3 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
4 Sobic.010G034100 GTP-binding protein GUF1, putative, expressed -
5 Sobic.009G107300 3\'-5\' exonuclease, putative, expressed -
6 Sobic.007G017800 OsFBX142 - F-box domain containing protein, expressed -
7 Sobic.004G209700 FAR1 family protein, expressed -
8 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
9 Sobic.003G241700 SET domain containing protein, expressed -
10 Sobic.010G226000 expressed protein -
11 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
12 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
13 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
14 Sobic.003G119600 zinc finger, C3HC4 type domain containing protein, expressed -
15 Sobic.001G111850 - -
16 Sobic.001G014300 OsFBDUF15 - F-box and DUF domain containing protein, expressed -
17 Sobic.010G068700 transporter family protein, putative, expressed K15281: solute carrier family 35
18 Sobic.009G002800 STIP1 homology and U box-containing protein 1, putative, expressed K09561: STUB1, STIP1 homology and U-box containing protein 1
19 Sobic.008G083200 transcription factor, putative, expressed K09060: plant G-box-binding factor
20 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -


Gene co-expression network
sample Sobic004G240400 Sobic004G240400 Sobic009G228000 Sobic009G228000 Sobic004G240400--Sobic009G228000 Sobic004G198600 Sobic004G198600 Sobic004G240400--Sobic004G198600 Sobic006G174850 Sobic006G174850 Sobic004G240400--Sobic006G174850 Sobic010G034100 Sobic010G034100 Sobic004G240400--Sobic010G034100 Sobic009G107300 Sobic009G107300 Sobic004G240400--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic004G240400--Sobic007G017800 Sobic004G209700 Sobic004G209700 Sobic004G240400--Sobic004G209700 Sobic005G062200 Sobic005G062200 Sobic004G240400--Sobic005G062200 Sobic003G241700 Sobic003G241700 Sobic004G240400--Sobic003G241700 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic009G228000--Sobic004G240400 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic002G079000 Sobic002G079000 Sobic004G198600--Sobic002G079000 Sobic004G198600--Sobic004G240400 Sobic010G068700 Sobic010G068700 Sobic004G198600--Sobic010G068700 Sobic007G087000 Sobic007G087000 Sobic004G198600--Sobic007G087000 Sobic004G198600--Sobic009G107300 Sobic001G014200 Sobic001G014200 Sobic004G198600--Sobic001G014200 Sobic002G355800 Sobic002G355800 Sobic004G198600--Sobic002G355800 Sobic010G169900 Sobic010G169900 Sobic004G198600--Sobic010G169900 Sobic008G116700 Sobic008G116700 Sobic004G198600--Sobic008G116700 Sobic007G218000 Sobic007G218000 Sobic006G174850--Sobic007G218000 Sobic006G131000 Sobic006G131000 Sobic006G174850--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic006G174850--Sobic009G044800 Sobic001G273700 Sobic001G273700 Sobic006G174850--Sobic001G273700 Sobic003G379200 Sobic003G379200 Sobic006G174850--Sobic003G379200 Sobic006G174850--Sobic005G062200 Sobic001G263600 Sobic001G263600 Sobic006G174850--Sobic001G263600 Sobic007G132100 Sobic007G132100 Sobic006G174850--Sobic007G132100 Sobic006G240100 Sobic006G240100 Sobic006G174850--Sobic006G240100 Sobic010G059500 Sobic010G059500 Sobic010G034100--Sobic010G059500 Sobic001G035200 Sobic001G035200 Sobic010G034100--Sobic001G035200 Sobic009G192300 Sobic009G192300 Sobic010G034100--Sobic009G192300 Sobic001G405600 Sobic001G405600 Sobic010G034100--Sobic001G405600 Sobic009G084900 Sobic009G084900 Sobic010G034100--Sobic009G084900 Sobic001G283600 Sobic001G283600 Sobic010G034100--Sobic001G283600 Sobic001G020000 Sobic001G020000 Sobic010G034100--Sobic001G020000 Sobic006G252900 Sobic006G252900 Sobic010G034100--Sobic006G252900 Sobic002G227500 Sobic002G227500 Sobic010G034100--Sobic002G227500 Sobic009G107300--Sobic009G228000 Sobic009G107300--Sobic007G087000 Sobic009G107300--Sobic004G240400 Sobic009G107300--Sobic008G116700 Sobic009G107300--Sobic003G043000 Sobic009G107300--Sobic004G198600 Sobic003G120300 Sobic003G120300 Sobic009G107300--Sobic003G120300 Sobic003G181700 Sobic003G181700 Sobic009G107300--Sobic003G181700 Sobic001G156900 Sobic001G156900 Sobic009G107300--Sobic001G156900 Sobic007G017800--Sobic001G405600 Sobic002G103600 Sobic002G103600 Sobic007G017800--Sobic002G103600 Sobic003G143200 Sobic003G143200 Sobic007G017800--Sobic003G143200 Sobic004G185800 Sobic004G185800 Sobic007G017800--Sobic004G185800 Sobic007G017800--Sobic010G034100 Sobic008G162900 Sobic008G162900 Sobic007G017800--Sobic008G162900 Sobic009G177500 Sobic009G177500 Sobic007G017800--Sobic009G177500 Sobic007G017800--Sobic006G234700 Sobic008G063300 Sobic008G063300 Sobic007G017800--Sobic008G063300 Sobic001G433800 Sobic001G433800 Sobic004G209700--Sobic001G433800 Sobic003G360400 Sobic003G360400 Sobic004G209700--Sobic003G360400 Sobic006G096900 Sobic006G096900 Sobic004G209700--Sobic006G096900 Sobic002G154000 Sobic002G154000 Sobic004G209700--Sobic002G154000 Sobic010G226000 Sobic010G226000 Sobic004G209700--Sobic010G226000 Sobic004G209700--Sobic003G241700 Sobic004G209700--Sobic009G044800 Sobic009G092400 Sobic009G092400 Sobic004G209700--Sobic009G092400 Sobic002G083500 Sobic002G083500 Sobic004G209700--Sobic002G083500 Sobic008G088872 Sobic008G088872 Sobic005G062200--Sobic008G088872 Sobic005G062200--Sobic001G263600 Sobic002G401500 Sobic002G401500 Sobic005G062200--Sobic002G401500 Sobic006G184900 Sobic006G184900 Sobic005G062200--Sobic006G184900 Sobic002G042600 Sobic002G042600 Sobic005G062200--Sobic002G042600 Sobic003G209200 Sobic003G209200 Sobic005G062200--Sobic003G209200 Sobic003G114400 Sobic003G114400 Sobic005G062200--Sobic003G114400 Sobic001G065100 Sobic001G065100 Sobic005G062200--Sobic001G065100 Sobic002G335600 Sobic002G335600 Sobic005G062200--Sobic002G335600 Sobic003G241700--Sobic003G043000 Sobic003G296900 Sobic003G296900 Sobic003G241700--Sobic003G296900 Sobic003G241700--Sobic009G228000 Sobic003G241700--Sobic004G209700 Sobic004G265500 Sobic004G265500 Sobic003G241700--Sobic004G265500 Sobic010G000800 Sobic010G000800 Sobic003G241700--Sobic010G000800 Sobic003G241700--Sobic006G234700 Sobic004G213800 Sobic004G213800 Sobic003G241700--Sobic004G213800 Sobic003G241700--Sobic010G034100
Octagon: transcription factors


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