Gene annotation
Transcriptome id Sobic.009G002800.1
Synonym Sb09g000470, CHIP, ATCHIP
Functional annotation STIP1 homology and U box-containing protein 1, putative, expressed
UniProt C5YXZ6
Pfam PF07719 PF13414 PF04564
Panther DB PTHR22904 PTHR22904:SF363
NCBI CDD KOG4642; Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats)
KEGG Orthology K09561; STUB1, STIP1 homology and U-box containing protein 1
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT3G07370 : carboxyl terminus of HSC70-interacting protein
RAP-DB (Rice) LOC_Os05g01460.1 : STIP1 homology and U box-containing protein 1, putative, expressed
MaizeGDB (Corn) Zm00025a041000
Brachypodium -
Barley -
Wheat TraesCS1A02G013700 , TraesCS1D02G011600 , TraesCS1B02G017900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G228000 ubiquitin-conjugating enzyme domain containing protein, expressed K10581: ubiquitin-conjugating enzyme E2 O
2 Sobic.004G240400 tRNA synthetase, putative, expressed -
3 Sobic.006G039400 cation efflux family protein, putative, expressed K14696: SLC30A9, solute carrier family 30 (zinc transporter), member 9
4 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
5 Sobic.010G068700 transporter family protein, putative, expressed K15281: solute carrier family 35
6 Sobic.006G174850 - K15193: SPTY2D1, protein SPT2
7 Sobic.008G083200 transcription factor, putative, expressed K09060: plant G-box-binding factor
8 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
9 Sobic.007G087000 aldose 1-epimerase, putative, expressed K01792: glucose-6-phosphate 1-epimerase
10 Sobic.003G241700 SET domain containing protein, expressed -
11 Sobic.004G209700 FAR1 family protein, expressed -
12 Sobic.010G226000 expressed protein -
13 Sobic.004G320700 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
14 Sobic.007G172200 inositol or phosphatidylinositol phosphatase/ phosphoric monoester hydrolase, putative, expressed K18081: myotubularin-related protein 1/2
15 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
16 Sobic.006G179100 transmembrane protein, putative, expressed -
17 Sobic.003G043000 expressed protein -
18 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
19 Sobic.001G480100 - -
20 Sobic.009G092400 zinc finger, C3HC4 type family protein, expressed -


Gene co-expression network
sample Sobic009G002800 Sobic009G002800 Sobic009G228000 Sobic009G228000 Sobic009G002800--Sobic009G228000 Sobic004G240400 Sobic004G240400 Sobic009G002800--Sobic004G240400 Sobic006G039400 Sobic006G039400 Sobic009G002800--Sobic006G039400 Sobic005G138300 Sobic005G138300 Sobic009G002800--Sobic005G138300 Sobic010G068700 Sobic010G068700 Sobic009G002800--Sobic010G068700 Sobic006G174850 Sobic006G174850 Sobic009G002800--Sobic006G174850 Sobic008G083200 Sobic008G083200 Sobic009G002800--Sobic008G083200 Sobic009G124700 Sobic009G124700 Sobic009G002800--Sobic009G124700 Sobic007G087000 Sobic007G087000 Sobic009G002800--Sobic007G087000 Sobic009G107300 Sobic009G107300 Sobic009G228000--Sobic009G107300 Sobic003G043000 Sobic003G043000 Sobic009G228000--Sobic003G043000 Sobic009G228000--Sobic004G240400 Sobic003G241700 Sobic003G241700 Sobic009G228000--Sobic003G241700 Sobic003G363700 Sobic003G363700 Sobic009G228000--Sobic003G363700 Sobic002G063900 Sobic002G063900 Sobic009G228000--Sobic002G063900 Sobic003G297500 Sobic003G297500 Sobic009G228000--Sobic003G297500 Sobic004G209700 Sobic004G209700 Sobic009G228000--Sobic004G209700 Sobic006G234700 Sobic006G234700 Sobic009G228000--Sobic006G234700 Sobic004G240400--Sobic009G228000 Sobic004G198600 Sobic004G198600 Sobic004G240400--Sobic004G198600 Sobic004G240400--Sobic006G174850 Sobic010G034100 Sobic010G034100 Sobic004G240400--Sobic010G034100 Sobic004G240400--Sobic009G107300 Sobic007G017800 Sobic007G017800 Sobic004G240400--Sobic007G017800 Sobic004G240400--Sobic004G209700 Sobic005G062200 Sobic005G062200 Sobic004G240400--Sobic005G062200 Sobic004G240400--Sobic003G241700 Sobic006G093300 Sobic006G093300 Sobic006G039400--Sobic006G093300 Sobic001G405600 Sobic001G405600 Sobic006G039400--Sobic001G405600 Sobic003G296900 Sobic003G296900 Sobic006G039400--Sobic003G296900 Sobic001G237600 Sobic001G237600 Sobic006G039400--Sobic001G237600 Sobic003G182300 Sobic003G182300 Sobic006G039400--Sobic003G182300 Sobic010G230600 Sobic010G230600 Sobic006G039400--Sobic010G230600 Sobic007G162100 Sobic007G162100 Sobic006G039400--Sobic007G162100 Sobic006G039400--Sobic007G087000 Sobic001G283600 Sobic001G283600 Sobic006G039400--Sobic001G283600 Sobic003G444800 Sobic003G444800 Sobic005G138300--Sobic003G444800 Sobic007G218000 Sobic007G218000 Sobic005G138300--Sobic007G218000 Sobic001G114000 Sobic001G114000 Sobic005G138300--Sobic001G114000 Sobic005G138300--Sobic009G124700 Sobic002G103600 Sobic002G103600 Sobic005G138300--Sobic002G103600 SobicK028600 SobicK028600 Sobic005G138300--SobicK028600 Sobic002G112700 Sobic002G112700 Sobic005G138300--Sobic002G112700 Sobic004G265500 Sobic004G265500 Sobic005G138300--Sobic004G265500 Sobic002G164300 Sobic002G164300 Sobic005G138300--Sobic002G164300 Sobic010G068700--Sobic004G198600 Sobic002G355800 Sobic002G355800 Sobic010G068700--Sobic002G355800 Sobic010G068700--Sobic009G228000 Sobic010G068700--Sobic007G162100 Sobic010G068700--Sobic003G182300 Sobic001G049400 Sobic001G049400 Sobic010G068700--Sobic001G049400 Sobic010G068700--Sobic006G039400 Sobic001G014200 Sobic001G014200 Sobic010G068700--Sobic001G014200 Sobic010G068700--Sobic006G174850 Sobic006G174850--Sobic007G218000 Sobic006G131000 Sobic006G131000 Sobic006G174850--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic006G174850--Sobic009G044800 Sobic001G273700 Sobic001G273700 Sobic006G174850--Sobic001G273700 Sobic003G379200 Sobic003G379200 Sobic006G174850--Sobic003G379200 Sobic006G174850--Sobic005G062200 Sobic001G263600 Sobic001G263600 Sobic006G174850--Sobic001G263600 Sobic007G132100 Sobic007G132100 Sobic006G174850--Sobic007G132100 Sobic006G240100 Sobic006G240100 Sobic006G174850--Sobic006G240100 Sobic008G083200--Sobic003G379200 Sobic008G083200--Sobic009G044800 Sobic008G083200--Sobic006G174850 Sobic006G261400 Sobic006G261400 Sobic008G083200--Sobic006G261400 Sobic003G428100 Sobic003G428100 Sobic008G083200--Sobic003G428100 Sobic006G127600 Sobic006G127600 Sobic008G083200--Sobic006G127600 Sobic002G117400 Sobic002G117400 Sobic008G083200--Sobic002G117400 Sobic006G118700 Sobic006G118700 Sobic008G083200--Sobic006G118700 Sobic008G083200--Sobic006G131000 Sobic009G124700--Sobic007G218000 Sobic009G124700--Sobic009G044800 Sobic003G443100 Sobic003G443100 Sobic009G124700--Sobic003G443100 Sobic009G177500 Sobic009G177500 Sobic009G124700--Sobic009G177500 Sobic007G075900 Sobic007G075900 Sobic009G124700--Sobic007G075900 Sobic003G118200 Sobic003G118200 Sobic009G124700--Sobic003G118200 Sobic001G441400 Sobic001G441400 Sobic009G124700--Sobic001G441400 Sobic009G124700--Sobic007G132100 Sobic009G124700--Sobic005G138300 Sobic002G079000 Sobic002G079000 Sobic007G087000--Sobic002G079000 Sobic007G076400 Sobic007G076400 Sobic007G087000--Sobic007G076400 Sobic002G306100 Sobic002G306100 Sobic007G087000--Sobic002G306100 Sobic008G116700 Sobic008G116700 Sobic007G087000--Sobic008G116700 Sobic006G250800 Sobic006G250800 Sobic007G087000--Sobic006G250800 Sobic007G087000--Sobic001G014200 Sobic007G087000--Sobic001G237600 Sobic007G172700 Sobic007G172700 Sobic007G087000--Sobic007G172700 Sobic007G087000--Sobic009G107300
Octagon: transcription factors


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