Gene annotation
Transcriptome id Sobic.009G124700.1
Synonym Sb09g019230
Functional annotation endonuclease/exonuclease/phosphatase family domain containing protein, expressed
UniProt C5YXH3
Pfam PF03372
Panther DB PTHR12121 PTHR12121:SF42
NCBI CDD KOG0620; Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins
KEGG Orthology K12603; CNOT6, CCR4-NOT transcription complex subunit 6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G31500 : DNAse I-like superfamily protein
RAP-DB (Rice) LOC_Os05g32330.1 : endonuclease/exonuclease/phosphatase family domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat TraesCS1B02G254600 , TraesCS1A02G243100 , TraesCS1A02G243100 , TraesCS1D02G243100
Populus -


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cDNA sequences
Sobic.009G124700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
2 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
3 Sobic.003G443100 lysine ketoglutarate reductase trans-splicing related 1, putative, expressed -
4 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
5 Sobic.007G075900 SKP1, putative, expressed K03094: SKP1, S-phase kinase-associated protein 1
6 Sobic.003G118200 phosphoadenosine phosphosulfate, putative, expressed -
7 Sobic.001G441400 transcription factor, putative, expressed K09060: plant G-box-binding factor
8 Sobic.007G132100 myrosinase precursor, putative, expressed -
9 Sobic.005G138300 retinoblastoma-related protein-like, putative, expressed K04681: retinoblastoma-like protein 1
10 Sobic.002G056701 - -
11 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein
12 Sobic.001G114000 expressed protein -
13 Sobic.004G084700 - -
14 Sobic.010G166400 initiator tRNA phosphoribosyl transferase family protein, putative, expressed K15463: tRNA A64-2'-O-ribosylphosphate transferase
15 Sobic.002G260400 - -
16 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
17 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
18 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
19 Sobic.004G353200 proteasome subunit, putative, expressed K03035: PSMD12, 26S proteasome regulatory subunit N5
20 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -


Gene co-expression network
sample Sobic009G124700 Sobic009G124700 Sobic007G218000 Sobic007G218000 Sobic009G124700--Sobic007G218000 Sobic009G044800 Sobic009G044800 Sobic009G124700--Sobic009G044800 Sobic003G443100 Sobic003G443100 Sobic009G124700--Sobic003G443100 Sobic009G177500 Sobic009G177500 Sobic009G124700--Sobic009G177500 Sobic007G075900 Sobic007G075900 Sobic009G124700--Sobic007G075900 Sobic003G118200 Sobic003G118200 Sobic009G124700--Sobic003G118200 Sobic001G441400 Sobic001G441400 Sobic009G124700--Sobic001G441400 Sobic007G132100 Sobic007G132100 Sobic009G124700--Sobic007G132100 Sobic005G138300 Sobic005G138300 Sobic009G124700--Sobic005G138300 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic002G310200 Sobic002G310200 Sobic003G443100--Sobic002G310200 Sobic003G184699 Sobic003G184699 Sobic003G443100--Sobic003G184699 Sobic008G047800 Sobic008G047800 Sobic003G443100--Sobic008G047800 Sobic003G443100--Sobic001G441400 Sobic009G245800 Sobic009G245800 Sobic003G443100--Sobic009G245800 Sobic005G027400 Sobic005G027400 Sobic003G443100--Sobic005G027400 Sobic003G141500 Sobic003G141500 Sobic003G443100--Sobic003G141500 Sobic001G363500 Sobic001G363500 Sobic003G443100--Sobic001G363500 Sobic010G053800 Sobic010G053800 Sobic003G443100--Sobic010G053800 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic004G353200 Sobic004G353200 Sobic007G075900--Sobic004G353200 Sobic007G075900--Sobic001G392300 Sobic007G075900--Sobic009G177500 Sobic007G075900--Sobic009G044800 Sobic008G014500 Sobic008G014500 Sobic007G075900--Sobic008G014500 Sobic004G274200 Sobic004G274200 Sobic007G075900--Sobic004G274200 Sobic003G401100 Sobic003G401100 Sobic007G075900--Sobic003G401100 Sobic004G084300 Sobic004G084300 Sobic007G075900--Sobic004G084300 Sobic007G075900--Sobic009G124700 Sobic009G053900 Sobic009G053900 Sobic003G118200--Sobic009G053900 Sobic009G191000 Sobic009G191000 Sobic003G118200--Sobic009G191000 Sobic009G113000 Sobic009G113000 Sobic003G118200--Sobic009G113000 Sobic003G422500 Sobic003G422500 Sobic003G118200--Sobic003G422500 Sobic002G008900 Sobic002G008900 Sobic003G118200--Sobic002G008900 Sobic004G347400 Sobic004G347400 Sobic003G118200--Sobic004G347400 Sobic007G075400 Sobic007G075400 Sobic003G118200--Sobic007G075400 Sobic001G451400 Sobic001G451400 Sobic003G118200--Sobic001G451400 Sobic003G313500 Sobic003G313500 Sobic003G118200--Sobic003G313500 Sobic001G441400--Sobic001G451400 Sobic003G404500 Sobic003G404500 Sobic001G441400--Sobic003G404500 Sobic006G252900 Sobic006G252900 Sobic001G441400--Sobic006G252900 Sobic001G441400--Sobic005G027400 Sobic009G165700 Sobic009G165700 Sobic001G441400--Sobic009G165700 Sobic001G441400--Sobic001G363500 Sobic003G102400 Sobic003G102400 Sobic001G441400--Sobic003G102400 Sobic002G299700 Sobic002G299700 Sobic001G441400--Sobic002G299700 Sobic004G351100 Sobic004G351100 Sobic001G441400--Sobic004G351100 Sobic007G132100--Sobic007G218000 Sobic007G132100--Sobic004G072100 Sobic004G039600 Sobic004G039600 Sobic007G132100--Sobic004G039600 Sobic004G178200 Sobic004G178200 Sobic007G132100--Sobic004G178200 Sobic007G132100--Sobic006G131000 Sobic007G132100--Sobic006G012500 Sobic007G132100--Sobic009G044800 Sobic008G099800 Sobic008G099800 Sobic007G132100--Sobic008G099800 Sobic007G132100--Sobic010G204400 Sobic003G444800 Sobic003G444800 Sobic005G138300--Sobic003G444800 Sobic005G138300--Sobic007G218000 Sobic001G114000 Sobic001G114000 Sobic005G138300--Sobic001G114000 Sobic005G138300--Sobic009G124700 Sobic002G103600 Sobic002G103600 Sobic005G138300--Sobic002G103600 SobicK028600 SobicK028600 Sobic005G138300--SobicK028600 Sobic005G138300--Sobic002G112700 Sobic004G265500 Sobic004G265500 Sobic005G138300--Sobic004G265500 Sobic002G164300 Sobic002G164300 Sobic005G138300--Sobic002G164300
Octagon: transcription factors


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