Gene annotation
Transcriptome id Sobic.004G084700.4,Sobic.004G084700.1,Sobic.004G084700.2,Sobic.004G084700.3,Sobic.004G084700.5
Synonym Sb04g006980
Functional annotation -
UniProt A0A1Z5RLH7 , A0A1Z5RLG6 , A0A1Z5RLH8 , A0A1Z5RLZ8 , A0A1Z5RMA6
Pfam PF04851 PF04438 PF00271
Panther DB PTHR24031 PTHR24031:SF42
NCBI CDD KOG0331; ATP-dependent RNA helicase
KEGG Orthology -
Gene Ontology GO:0016787; hydrolase activity GO:0005524ATP binding GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G02065 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os02g10770.2 : DEAD-box ATP-dependent RNA helicase 41, putative, expressed
MaizeGDB (Corn) Zm00025a019535
Brachypodium PNT66123 , PNT66122 , KQJ93916
Barley HORVU6Hr1G038030.2 , HORVU6Hr1G038030.3 , HORVU6Hr1G038030.1 , HORVU6Hr1G038030.6 , HORVU6Hr1G038030.7 , HORVU6Hr1G038030.4 , HORVU6Hr1G038030.5 , HORVU6Hr1G038030.8 , HORVU6Hr1G038030.9
Wheat TraesCS1D02G025600 , TraesCS6D02G168500 , TraesCS6D02G168500 , TraesCS6D02G168500 , TraesCS6A02G181300 , TraesCS6A02G181300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G452000 heat shock protein DnaJ, putative, expressed K03686: molecular chaperone DnaJ
2 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
3 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
4 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
5 Sobic.002G112700 glutamine-dependent NAD, putative, expressed K01950: E6.3.5.1, NADSYN1, QNS1, NAD+ synthase (glutamine-hydrolysing)
6 Sobic.005G118600 NB-ARC domain containing protein, expressed -
7 Sobic.008G153000 MATH domain containing protein, expressed -
8 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
9 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
10 Sobic.008G113100 protein binding protein, putative, expressed -
11 Sobic.010G116600 FHA domain containing protein, putative, expressed -
12 Sobic.002G260400 - -
13 Sobic.002G264200 RNA recognition motif containing protein, expressed -
14 Sobic.002G297200 ZOS9-19 - C2H2 zinc finger protein, expressed -
15 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
16 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
17 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
18 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
19 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
20 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22


Gene co-expression network
sample Sobic004G084700 Sobic004G084700 Sobic001G452000 Sobic001G452000 Sobic004G084700--Sobic001G452000 Sobic010G236400 Sobic010G236400 Sobic004G084700--Sobic010G236400 Sobic003G059750 Sobic003G059750 Sobic004G084700--Sobic003G059750 Sobic007G218000 Sobic007G218000 Sobic004G084700--Sobic007G218000 Sobic002G112700 Sobic002G112700 Sobic004G084700--Sobic002G112700 Sobic005G118600 Sobic005G118600 Sobic004G084700--Sobic005G118600 Sobic008G153000 Sobic008G153000 Sobic004G084700--Sobic008G153000 Sobic008G047800 Sobic008G047800 Sobic004G084700--Sobic008G047800 Sobic009G040600 Sobic009G040600 Sobic004G084700--Sobic009G040600 Sobic001G452000--Sobic004G084700 Sobic001G452000--Sobic005G118600 Sobic001G441400 Sobic001G441400 Sobic001G452000--Sobic001G441400 Sobic001G452000--Sobic010G236400 Sobic003G445400 Sobic003G445400 Sobic001G452000--Sobic003G445400 Sobic004G067700 Sobic004G067700 Sobic001G452000--Sobic004G067700 Sobic001G091400 Sobic001G091400 Sobic001G452000--Sobic001G091400 Sobic008G084700 Sobic008G084700 Sobic001G452000--Sobic008G084700 Sobic002G260400 Sobic002G260400 Sobic001G452000--Sobic002G260400 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic002G264200 Sobic002G264200 Sobic010G236400--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic007G103600 Sobic007G103600 Sobic003G059750--Sobic007G103600 Sobic005G207500 Sobic005G207500 Sobic003G059750--Sobic005G207500 Sobic005G112300 Sobic005G112300 Sobic003G059750--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic003G059750--Sobic010G279450 Sobic002G404700 Sobic002G404700 Sobic003G059750--Sobic002G404700 Sobic003G444800 Sobic003G444800 Sobic003G059750--Sobic003G444800 Sobic001G311500 Sobic001G311500 Sobic003G059750--Sobic001G311500 Sobic002G405800 Sobic002G405800 Sobic003G059750--Sobic002G405800 Sobic003G059750--Sobic002G071500 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic004G072100 Sobic004G072100 Sobic007G218000--Sobic004G072100 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic001G114000 Sobic001G114000 Sobic002G112700--Sobic001G114000 Sobic002G112700--Sobic007G218000 Sobic007G008900 Sobic007G008900 Sobic002G112700--Sobic007G008900 Sobic002G112700--Sobic003G059750 Sobic002G112700--Sobic002G405800 Sobic002G112700--Sobic003G444800 Sobic002G112700--Sobic004G072100 Sobic007G011300 Sobic007G011300 Sobic002G112700--Sobic007G011300 Sobic009G166300 Sobic009G166300 Sobic002G112700--Sobic009G166300 Sobic005G118600--Sobic003G059750 Sobic005G118600--Sobic008G084700 Sobic003G225700 Sobic003G225700 Sobic005G118600--Sobic003G225700 Sobic001G065000 Sobic001G065000 Sobic005G118600--Sobic001G065000 Sobic005G118600--Sobic009G166300 Sobic005G118600--Sobic008G153000 Sobic005G118600--Sobic001G114000 Sobic005G118600--Sobic002G071500 Sobic005G118600--Sobic007G103600 Sobic006G116100 Sobic006G116100 Sobic008G153000--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic008G153000--Sobic006G046700 Sobic008G149800 Sobic008G149800 Sobic008G153000--Sobic008G149800 Sobic008G153000--Sobic002G264200 Sobic001G155000 Sobic001G155000 Sobic008G153000--Sobic001G155000 Sobic008G153000--Sobic003G445400 Sobic008G153000--Sobic003G059750 Sobic007G026000 Sobic007G026000 Sobic008G153000--Sobic007G026000 Sobic008G153000--Sobic010G069100 Sobic002G006900 Sobic002G006900 Sobic008G047800--Sobic002G006900 Sobic008G047800--Sobic004G084300 Sobic001G512700 Sobic001G512700 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic008G047800--Sobic004G274200 Sobic002G309600 Sobic002G309600 Sobic008G047800--Sobic002G309600 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic009G040600--Sobic007G065400 Sobic008G028700 Sobic008G028700 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400
Octagon: transcription factors


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