Gene annotation
Transcriptome id Sobic.002G260400.1
Synonym Sb02g029520
Functional annotation -
UniProt C5X5B0
Pfam PF05018
Panther DB PTHR12458
NCBI CDD KOG3213; Transcription factor IIB
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT3G12300 : -
RAP-DB (Rice) -
MaizeGDB (Corn) Zm00025a047606
Brachypodium KQJ90959 , PNT64907
Barley HORVU5Hr1G077440.1 , HORVU5Hr1G077440.3 , HORVU5Hr1G077440.2 , HORVU5Hr1G077440.5 , HORVU5Hr1G077440.4 , HORVU5Hr1G077440.6
Wheat TraesCS5B02G291900
Populus -


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cDNA sequences
Sobic.002G260400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
2 Sobic.002G056701 - -
3 Sobic.002G063900 zinc ion binding protein, putative, expressed -
4 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
5 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
6 Sobic.008G153000 MATH domain containing protein, expressed -
7 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
8 Sobic.002G083500 OsFBX136 - F-box domain containing protein, expressed -
9 Sobic.010G245000 DTW domain containing protein, putative, expressed -
10 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
11 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
12 Sobic.004G084700 - -
13 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
14 Sobic.009G192300 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
15 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
16 Sobic.007G103600 protein of unknown function DUF1296 domain containing protein, expressed -
17 Sobic.001G452000 heat shock protein DnaJ, putative, expressed K03686: molecular chaperone DnaJ
18 Sobic.002G264200 RNA recognition motif containing protein, expressed -
19 Sobic.006G281700 DUF803 domain containing, putative, expressed -
20 Sobic.005G013200 BAH domain containing protein, expressed -


Gene co-expression network
sample Sobic002G260400 Sobic002G260400 Sobic008G173100 Sobic008G173100 Sobic002G260400--Sobic008G173100 Sobic002G056701 Sobic002G056701 Sobic002G260400--Sobic002G056701 Sobic002G063900 Sobic002G063900 Sobic002G260400--Sobic002G063900 Sobic002G370900 Sobic002G370900 Sobic002G260400--Sobic002G370900 Sobic006G116100 Sobic006G116100 Sobic002G260400--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic002G260400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G260400--Sobic010G236400 Sobic002G083500 Sobic002G083500 Sobic002G260400--Sobic002G083500 Sobic010G245000 Sobic010G245000 Sobic002G260400--Sobic010G245000 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic002G264200 Sobic002G264200 Sobic008G173100--Sobic002G264200 Sobic008G173100--Sobic010G236400 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic008G173100--Sobic010G245000 Sobic002G056701--Sobic010G245000 Sobic002G056701--Sobic002G260400 Sobic007G218000 Sobic007G218000 Sobic002G056701--Sobic007G218000 Sobic006G195700 Sobic006G195700 Sobic002G056701--Sobic006G195700 Sobic004G072100 Sobic004G072100 Sobic002G056701--Sobic004G072100 Sobic008G149800 Sobic008G149800 Sobic002G056701--Sobic008G149800 Sobic002G056701--Sobic008G173100 Sobic001G515000 Sobic001G515000 Sobic002G056701--Sobic001G515000 Sobic010G053800 Sobic010G053800 Sobic002G056701--Sobic010G053800 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G063900--Sobic002G260400 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic001G176200 Sobic001G176200 Sobic002G370900--Sobic001G176200 Sobic006G082900 Sobic006G082900 Sobic002G370900--Sobic006G082900 Sobic004G067700 Sobic004G067700 Sobic002G370900--Sobic004G067700 Sobic006G173100 Sobic006G173100 Sobic002G370900--Sobic006G173100 Sobic003G008500 Sobic003G008500 Sobic002G370900--Sobic003G008500 Sobic002G370900--Sobic002G260400 Sobic002G310200 Sobic002G310200 Sobic002G370900--Sobic002G310200 Sobic002G197100 Sobic002G197100 Sobic002G370900--Sobic002G197100 Sobic004G345700 Sobic004G345700 Sobic002G370900--Sobic004G345700 Sobic006G116100--Sobic008G153000 Sobic006G116100--Sobic008G149800 Sobic006G116100--Sobic008G173100 Sobic003G160000 Sobic003G160000 Sobic006G116100--Sobic003G160000 Sobic006G116100--Sobic002G063900 Sobic002G357700 Sobic002G357700 Sobic006G116100--Sobic002G357700 Sobic003G241200 Sobic003G241200 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700 Sobic008G153000--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic008G153000--Sobic006G046700 Sobic008G153000--Sobic008G149800 Sobic008G153000--Sobic002G264200 Sobic001G155000 Sobic001G155000 Sobic008G153000--Sobic001G155000 Sobic003G445400 Sobic003G445400 Sobic008G153000--Sobic003G445400 Sobic003G059750 Sobic003G059750 Sobic008G153000--Sobic003G059750 Sobic007G026000 Sobic007G026000 Sobic008G153000--Sobic007G026000 Sobic010G069100 Sobic010G069100 Sobic008G153000--Sobic010G069100 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic010G236400--Sobic002G264200 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic002G071500 Sobic002G071500 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic001G384300 Sobic001G384300 Sobic002G083500--Sobic001G384300 Sobic002G154000 Sobic002G154000 Sobic002G083500--Sobic002G154000 Sobic001G433800 Sobic001G433800 Sobic002G083500--Sobic001G433800 Sobic001G493200 Sobic001G493200 Sobic002G083500--Sobic001G493200 Sobic002G083500--Sobic002G260400 Sobic003G133900 Sobic003G133900 Sobic002G083500--Sobic003G133900 Sobic006G234700 Sobic006G234700 Sobic002G083500--Sobic006G234700 Sobic002G083500--Sobic007G090430 Sobic001G398800 Sobic001G398800 Sobic002G083500--Sobic001G398800 Sobic010G245000--Sobic002G056701 Sobic010G245000--Sobic001G176200 Sobic010G245000--Sobic004G345700 Sobic010G245000--Sobic004G084300 Sobic005G154500 Sobic005G154500 Sobic010G245000--Sobic005G154500 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic010G245000--Sobic003G241200 Sobic010G245000--Sobic002G260400
Octagon: transcription factors


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