Gene annotation
Transcriptome id Sobic.002G056701.1
Synonym -
Functional annotation -
UniProt A0A1W0W2I3
Pfam PF04045
Panther DB PTHR12058
NCBI CDD KOG2826; Actin-related protein Arp2/3 complex, subunit ARPC2
KEGG Orthology -
Gene Ontology GO:0015629; actin cytoskeleton GO:0005885Arp2/3 protein complex


Orthologs (automatic annotation)
TAIR AT1G30825 : Arp2/3 complex, 34 kD subunit p34-Arc
RAP-DB (Rice) LOC_Os01g46580.1 : actin-related protein 2/3 complex subunit 2, putative, expressed
MaizeGDB (Corn) Zm00025a016072
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G245000 DTW domain containing protein, putative, expressed -
2 Sobic.002G260400 - -
3 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
4 Sobic.006G195700 WD domain, G-beta repeat domain containing protein, expressed K14962: WDR82, SWD2, COMPASS component SWD2
5 Sobic.004G072100 centromere/kinetochore protein zw10, putative, expressed K11578: ZW10, protein transport protein DSL1/ZW10
6 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
7 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
8 Sobic.001G515000 protein-S-isoprenylcysteine O-methyltransferase. tax, putative, expressed K00587: ICMT, protein-S-isoprenylcysteine O-methyltransferase
9 Sobic.010G053800 AP-1 complex subunit gamma-1, putative, expressed K12391: AP-1 complex subunit gamma-1
10 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
11 Sobic.010G204400 phox domain-containing protein, putative, expressed -
12 Sobic.009G124700 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
13 Sobic.002G264200 RNA recognition motif containing protein, expressed -
14 Sobic.006G163800 diacylglycerol kinase, putative, expressed -
15 Sobic.008G153000 MATH domain containing protein, expressed -
16 Sobic.002G370900 OsPOP16 - Putative Prolyl Oligopeptidase homologue, expressed K06889: uncharacterized protein
17 Sobic.004G067700 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
18 Sobic.001G452000 heat shock protein DnaJ, putative, expressed K03686: molecular chaperone DnaJ
19 Sobic.007G132100 myrosinase precursor, putative, expressed -
20 Sobic.003G404500 dynamin family protein, putative, expressed K17065: dynamin 1-like protein


Gene co-expression network
sample Sobic002G056701 Sobic002G056701 Sobic010G245000 Sobic010G245000 Sobic002G056701--Sobic010G245000 Sobic002G260400 Sobic002G260400 Sobic002G056701--Sobic002G260400 Sobic007G218000 Sobic007G218000 Sobic002G056701--Sobic007G218000 Sobic006G195700 Sobic006G195700 Sobic002G056701--Sobic006G195700 Sobic004G072100 Sobic004G072100 Sobic002G056701--Sobic004G072100 Sobic008G149800 Sobic008G149800 Sobic002G056701--Sobic008G149800 Sobic008G173100 Sobic008G173100 Sobic002G056701--Sobic008G173100 Sobic001G515000 Sobic001G515000 Sobic002G056701--Sobic001G515000 Sobic010G053800 Sobic010G053800 Sobic002G056701--Sobic010G053800 Sobic010G245000--Sobic002G056701 Sobic001G176200 Sobic001G176200 Sobic010G245000--Sobic001G176200 Sobic004G345700 Sobic004G345700 Sobic010G245000--Sobic004G345700 Sobic004G084300 Sobic004G084300 Sobic010G245000--Sobic004G084300 Sobic005G154500 Sobic005G154500 Sobic010G245000--Sobic005G154500 Sobic002G264200 Sobic002G264200 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic003G241200 Sobic003G241200 Sobic010G245000--Sobic003G241200 Sobic010G245000--Sobic002G260400 Sobic002G260400--Sobic008G173100 Sobic002G260400--Sobic002G056701 Sobic002G063900 Sobic002G063900 Sobic002G260400--Sobic002G063900 Sobic002G370900 Sobic002G370900 Sobic002G260400--Sobic002G370900 Sobic006G116100 Sobic006G116100 Sobic002G260400--Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic002G260400--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G260400--Sobic010G236400 Sobic002G083500 Sobic002G083500 Sobic002G260400--Sobic002G083500 Sobic002G260400--Sobic010G245000 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic009G044800 Sobic009G044800 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic006G195700--Sobic010G204400 Sobic009G245800 Sobic009G245800 Sobic006G195700--Sobic009G245800 Sobic006G195700--Sobic010G236400 Sobic006G195700--Sobic002G056701 Sobic002G310200 Sobic002G310200 Sobic006G195700--Sobic002G310200 Sobic006G195700--Sobic002G260400 Sobic006G195700--Sobic010G245000 Sobic006G173100 Sobic006G173100 Sobic006G195700--Sobic006G173100 Sobic003G187500 Sobic003G187500 Sobic006G195700--Sobic003G187500 Sobic004G072100--Sobic007G218000 Sobic004G072100--Sobic010G053800 Sobic010G275500 Sobic010G275500 Sobic004G072100--Sobic010G275500 Sobic004G072100--Sobic007G132100 Sobic004G072100--Sobic006G012500 Sobic010G069100 Sobic010G069100 Sobic004G072100--Sobic010G069100 Sobic010G116600 Sobic010G116600 Sobic004G072100--Sobic010G116600 Sobic008G047800 Sobic008G047800 Sobic004G072100--Sobic008G047800 Sobic001G155000 Sobic001G155000 Sobic004G072100--Sobic001G155000 Sobic008G149800--Sobic006G116100 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic002G357700 Sobic002G357700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic008G149800--Sobic005G154500 Sobic008G149800--Sobic001G155000 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic008G173100--Sobic010G236400 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic008G173100--Sobic010G245000 Sobic004G286500 Sobic004G286500 Sobic001G515000--Sobic004G286500 Sobic001G515000--Sobic004G072100 Sobic001G515000--Sobic010G245000 Sobic001G515000--Sobic002G056701 Sobic001G515000--Sobic010G053800 Sobic006G200600 Sobic006G200600 Sobic001G515000--Sobic006G200600 Sobic003G187200 Sobic003G187200 Sobic001G515000--Sobic003G187200 Sobic001G515000--Sobic002G264200 Sobic001G515000--Sobic007G218000 Sobic010G053800--Sobic006G012500 Sobic010G053800--Sobic010G275500 Sobic010G053800--Sobic004G072100 Sobic010G053800--Sobic001G155000 Sobic010G053800--Sobic003G187500 Sobic010G053800--Sobic008G047800 Sobic010G053800--Sobic010G116600 Sobic006G163800 Sobic006G163800 Sobic010G053800--Sobic006G163800 Sobic004G039600 Sobic004G039600 Sobic010G053800--Sobic004G039600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.