Gene annotation
Transcriptome id Sobic.006G116100.1,Sobic.006G116100.2
Synonym Sb06g019745
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PLI3 , C5YAC5
Pfam PF01480 PF00076 PF01480
Panther DB PTHR24012 PTHR24012:SF369
NCBI CDD KOG3702; Nuclear polyadenylated RNA binding protein
KEGG Orthology -
Gene Ontology GO:0006397; mRNA processing GO:0006397mRNA processing GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G12640 : RNA binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os04g39629.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a011030 , Zm00025a056282
Brachypodium KQJ83115
Barley HORVU2Hr1G081930.3 , HORVU2Hr1G081930.2 , HORVU2Hr1G081930.1 , HORVU2Hr1G081930.7 , HORVU2Hr1G081930.6 , HORVU2Hr1G081930.5 , HORVU2Hr1G081930.4 , HORVU2Hr1G081930.8
Wheat TraesCS2B02G352200 , TraesCS2B02G352200 , TraesCS2B02G352200 , TraesCS2D02G332600 , TraesCS2D02G332600 , TraesCS2A02G330100 , TraesCS2A02G330100 , TraesCS2A02G330100
Populus -


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cDNA sequences
Sobic.006G116100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G153000 MATH domain containing protein, expressed -
2 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
3 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
4 Sobic.003G160000 SUMO protease, putative, expressed K08592: sentrin-specific protease 1
5 Sobic.002G063900 zinc ion binding protein, putative, expressed -
6 Sobic.002G357700 phospholipid-transporting ATPase 2, putative, expressed K01530: phospholipid-translocating ATPase
7 Sobic.003G241200 nucampholin, putative, expressed K13100: pre-mRNA-splicing factor CWC22
8 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
9 Sobic.003G416700 homeobox domain containing protein, expressed -
10 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
11 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
12 Sobic.002G260400 - -
13 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
14 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
15 Sobic.002G264200 RNA recognition motif containing protein, expressed -
16 Sobic.005G013200 BAH domain containing protein, expressed -
17 Sobic.K028600 expressed protein -
18 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
19 Sobic.002G103600 glycosyl transferase, group 1 domain containing protein, expressed K03857: PIGA, phosphatidylinositol N-acetylglucosaminyltransferase subunit A
20 Sobic.002G154000 EDM2, putative, expressed -


Gene co-expression network
sample Sobic006G116100 Sobic006G116100 Sobic008G153000 Sobic008G153000 Sobic006G116100--Sobic008G153000 Sobic008G149800 Sobic008G149800 Sobic006G116100--Sobic008G149800 Sobic008G173100 Sobic008G173100 Sobic006G116100--Sobic008G173100 Sobic003G160000 Sobic003G160000 Sobic006G116100--Sobic003G160000 Sobic002G063900 Sobic002G063900 Sobic006G116100--Sobic002G063900 Sobic002G357700 Sobic002G357700 Sobic006G116100--Sobic002G357700 Sobic003G241200 Sobic003G241200 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700 Sobic008G153000--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic008G153000--Sobic006G046700 Sobic008G153000--Sobic008G149800 Sobic002G264200 Sobic002G264200 Sobic008G153000--Sobic002G264200 Sobic001G155000 Sobic001G155000 Sobic008G153000--Sobic001G155000 Sobic003G445400 Sobic003G445400 Sobic008G153000--Sobic003G445400 Sobic003G059750 Sobic003G059750 Sobic008G153000--Sobic003G059750 Sobic007G026000 Sobic007G026000 Sobic008G153000--Sobic007G026000 Sobic010G069100 Sobic010G069100 Sobic008G153000--Sobic010G069100 Sobic008G149800--Sobic006G116100 Sobic008G149800--Sobic008G153000 Sobic007G061700 Sobic007G061700 Sobic008G149800--Sobic007G061700 Sobic008G149800--Sobic002G357700 Sobic002G164300 Sobic002G164300 Sobic008G149800--Sobic002G164300 Sobic004G246100 Sobic004G246100 Sobic008G149800--Sobic004G246100 Sobic002G158700 Sobic002G158700 Sobic008G149800--Sobic002G158700 Sobic005G154500 Sobic005G154500 Sobic008G149800--Sobic005G154500 Sobic008G149800--Sobic001G155000 Sobic002G260400 Sobic002G260400 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic003G160000--Sobic006G116100 Sobic003G160000--Sobic010G236400 Sobic003G160000--Sobic003G241200 Sobic003G160000--Sobic008G153000 Sobic010G204400 Sobic010G204400 Sobic003G160000--Sobic010G204400 Sobic003G160000--Sobic007G026000 Sobic004G084700 Sobic004G084700 Sobic003G160000--Sobic004G084700 Sobic001G452000 Sobic001G452000 Sobic003G160000--Sobic001G452000 Sobic006G032400 Sobic006G032400 Sobic003G160000--Sobic006G032400 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G063900--Sobic002G260400 Sobic002G063900--Sobic007G090430 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic002G357700--Sobic008G149800 Sobic002G357700--Sobic006G116100 Sobic002G357700--Sobic005G154500 Sobic002G357700--Sobic002G164300 Sobic005G013200 Sobic005G013200 Sobic002G357700--Sobic005G013200 Sobic002G357700--Sobic002G063900 Sobic006G186400 Sobic006G186400 Sobic002G357700--Sobic006G186400 Sobic002G357700--Sobic008G153000 Sobic009G126600 Sobic009G126600 Sobic002G357700--Sobic009G126600 Sobic004G084300 Sobic004G084300 Sobic003G241200--Sobic004G084300 Sobic006G165000 Sobic006G165000 Sobic003G241200--Sobic006G165000 Sobic003G241200--Sobic006G032400 Sobic002G248400 Sobic002G248400 Sobic003G241200--Sobic002G248400 Sobic002G320500 Sobic002G320500 Sobic003G241200--Sobic002G320500 Sobic003G173950 Sobic003G173950 Sobic003G241200--Sobic003G173950 Sobic003G241200--Sobic010G236400 Sobic003G200200 Sobic003G200200 Sobic003G241200--Sobic003G200200 Sobic002G157000 Sobic002G157000 Sobic003G241200--Sobic002G157000 Sobic002G153700 Sobic002G153700 Sobic009G119000--Sobic002G153700 Sobic009G119000--Sobic003G059750 Sobic002G071500 Sobic002G071500 Sobic009G119000--Sobic002G071500 Sobic010G065300 Sobic010G065300 Sobic009G119000--Sobic010G065300 Sobic009G119000--Sobic008G153000 Sobic010G275500 Sobic010G275500 Sobic009G119000--Sobic010G275500 Sobic009G119000--Sobic003G416700 Sobic004G048800 Sobic004G048800 Sobic009G119000--Sobic004G048800 Sobic009G119000--Sobic001G311500 Sobic002G154000 Sobic002G154000 Sobic003G416700--Sobic002G154000 Sobic003G416700--Sobic002G264200 Sobic001G461400 Sobic001G461400 Sobic003G416700--Sobic001G461400 Sobic007G183900 Sobic007G183900 Sobic003G416700--Sobic007G183900 Sobic001G051700 Sobic001G051700 Sobic003G416700--Sobic001G051700 Sobic003G360400 Sobic003G360400 Sobic003G416700--Sobic003G360400 Sobic003G416700--Sobic009G119000 Sobic001G063700 Sobic001G063700 Sobic003G416700--Sobic001G063700 Sobic003G416700--Sobic010G275500
Octagon: transcription factors


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