Gene annotation
Transcriptome id Sobic.008G173100.4,Sobic.008G173100.5,Sobic.008G173100.3
Synonym SUF3, ATARP6, ARP6, ESD1, Sb08g021780
Functional annotation actin, putative, expressed
UniProt C5YSC7
Pfam PF00022
Panther DB PTHR11937 PTHR11937:SF47
NCBI CDD KOG0680; Actin-related protein - Arp6p
KEGG Orthology K11662; ACTR6, actin-related protein 6
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0006338chromatin remodeling GO:0006281DNA repair


Orthologs (automatic annotation)
TAIR AT3G33520 : actin-related protein 6
RAP-DB (Rice) LOC_Os01g16414.3,LOC_Os01g16414.4,LOC_Os01g16414.2 : actin, putative, expressed
MaizeGDB (Corn) Zm00025a054564
Brachypodium -
Barley HORVU0Hr1G005770.1
Wheat TraesCS1B02G333100 , TraesCS2D02G600800 , TraesCS2B02G597500 , TraesCS2A02G585700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G260400 - -
2 Sobic.007G090430 - -
3 Sobic.006G116100 RNA recognition motif containing protein, putative, expressed -
4 Sobic.002G063900 zinc ion binding protein, putative, expressed -
5 Sobic.002G264200 RNA recognition motif containing protein, expressed -
6 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
7 Sobic.008G153000 MATH domain containing protein, expressed -
8 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
9 Sobic.010G245000 DTW domain containing protein, putative, expressed -
10 Sobic.005G154500 OsFBX407 - F-box domain containing protein, expressed -
11 Sobic.004G246100 nicalin, putative, expressed K06171: nicastrin
12 Sobic.001G246500 GTPase of unknown function domain containing protein, putative, expressed -
13 Sobic.003G416700 homeobox domain containing protein, expressed -
14 Sobic.005G013200 BAH domain containing protein, expressed -
15 Sobic.006G186400 ZOS4-12 - C2H2 zinc finger protein, expressed -
16 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
17 Sobic.001G066300 cell cycle control protein, putative, expressed -
18 Sobic.008G149800 histone acetyltransferase HAC5, putative, expressed K04498: EP300, CREBBP, E1A/CREB-binding protein
19 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
20 Sobic.007G071200 KH domain-containing protein, putative, expressed K13162: poly(rC)-binding protein 2


Gene co-expression network
sample Sobic008G173100 Sobic008G173100 Sobic002G260400 Sobic002G260400 Sobic008G173100--Sobic002G260400 Sobic007G090430 Sobic007G090430 Sobic008G173100--Sobic007G090430 Sobic006G116100 Sobic006G116100 Sobic008G173100--Sobic006G116100 Sobic002G063900 Sobic002G063900 Sobic008G173100--Sobic002G063900 Sobic002G264200 Sobic002G264200 Sobic008G173100--Sobic002G264200 Sobic010G236400 Sobic010G236400 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic002G260400--Sobic008G173100 Sobic002G056701 Sobic002G056701 Sobic002G260400--Sobic002G056701 Sobic002G260400--Sobic002G063900 Sobic002G370900 Sobic002G370900 Sobic002G260400--Sobic002G370900 Sobic002G260400--Sobic006G116100 Sobic002G260400--Sobic008G153000 Sobic002G260400--Sobic010G236400 Sobic002G083500 Sobic002G083500 Sobic002G260400--Sobic002G083500 Sobic002G260400--Sobic010G245000 Sobic007G090430--Sobic008G173100 Sobic009G177500 Sobic009G177500 Sobic007G090430--Sobic009G177500 Sobic001G384300 Sobic001G384300 Sobic007G090430--Sobic001G384300 Sobic009G260500 Sobic009G260500 Sobic007G090430--Sobic009G260500 Sobic007G090430--Sobic002G063900 Sobic001G398800 Sobic001G398800 Sobic007G090430--Sobic001G398800 Sobic004G048800 Sobic004G048800 Sobic007G090430--Sobic004G048800 Sobic005G207500 Sobic005G207500 Sobic007G090430--Sobic005G207500 Sobic002G317200 Sobic002G317200 Sobic007G090430--Sobic002G317200 Sobic006G116100--Sobic008G153000 Sobic008G149800 Sobic008G149800 Sobic006G116100--Sobic008G149800 Sobic006G116100--Sobic008G173100 Sobic003G160000 Sobic003G160000 Sobic006G116100--Sobic003G160000 Sobic006G116100--Sobic002G063900 Sobic002G357700 Sobic002G357700 Sobic006G116100--Sobic002G357700 Sobic003G241200 Sobic003G241200 Sobic006G116100--Sobic003G241200 Sobic009G119000 Sobic009G119000 Sobic006G116100--Sobic009G119000 Sobic003G416700 Sobic003G416700 Sobic006G116100--Sobic003G416700 Sobic002G063900--Sobic008G173100 Sobic002G063900--Sobic006G116100 Sobic004G357100 Sobic004G357100 Sobic002G063900--Sobic004G357100 Sobic002G063900--Sobic002G260400 Sobic002G063900--Sobic007G090430 Sobic004G246100 Sobic004G246100 Sobic002G063900--Sobic004G246100 Sobic002G278000 Sobic002G278000 Sobic002G063900--Sobic002G278000 Sobic002G063900--Sobic008G149800 SobicK028600 SobicK028600 Sobic002G063900--SobicK028600 Sobic010G069100 Sobic010G069100 Sobic002G264200--Sobic010G069100 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic002G264200--Sobic008G153000 Sobic002G264200--Sobic010G236400 Sobic002G071500 Sobic002G071500 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic004G084300 Sobic004G084300 Sobic010G236400--Sobic004G084300 Sobic010G236400--Sobic002G264200 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic010G236400--Sobic007G183900 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic008G153000--Sobic006G116100 Sobic006G046700 Sobic006G046700 Sobic008G153000--Sobic006G046700 Sobic008G153000--Sobic008G149800 Sobic008G153000--Sobic002G264200 Sobic001G155000 Sobic001G155000 Sobic008G153000--Sobic001G155000 Sobic003G445400 Sobic003G445400 Sobic008G153000--Sobic003G445400 Sobic003G059750 Sobic003G059750 Sobic008G153000--Sobic003G059750 Sobic007G026000 Sobic007G026000 Sobic008G153000--Sobic007G026000 Sobic008G153000--Sobic010G069100 Sobic010G139000 Sobic010G139000 Sobic001G311500--Sobic010G139000 Sobic009G247400 Sobic009G247400 Sobic001G311500--Sobic009G247400 Sobic005G112300 Sobic005G112300 Sobic001G311500--Sobic005G112300 Sobic001G311500--Sobic003G059750 Sobic008G009700 Sobic008G009700 Sobic001G311500--Sobic008G009700 Sobic004G314000 Sobic004G314000 Sobic001G311500--Sobic004G314000 Sobic010G279450 Sobic010G279450 Sobic001G311500--Sobic010G279450 Sobic008G028700 Sobic008G028700 Sobic001G311500--Sobic008G028700 Sobic001G363500 Sobic001G363500 Sobic001G311500--Sobic001G363500 Sobic010G245000--Sobic002G056701 Sobic001G176200 Sobic001G176200 Sobic010G245000--Sobic001G176200 Sobic004G345700 Sobic004G345700 Sobic010G245000--Sobic004G345700 Sobic010G245000--Sobic004G084300 Sobic005G154500 Sobic005G154500 Sobic010G245000--Sobic005G154500 Sobic010G245000--Sobic002G264200 Sobic010G245000--Sobic008G173100 Sobic010G245000--Sobic003G241200 Sobic010G245000--Sobic002G260400
Octagon: transcription factors


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