Gene annotation
Transcriptome id Sobic.001G306900.1,Sobic.001G306900.2
Synonym Sb01g029925
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6QM34 , A0A1B6QNB2
Pfam PF07719 PF13371 PF07719
Panther DB PTHR15704 PTHR15704:SF7
NCBI CDD KOG1127; TPR repeat-containing protein
KEGG Orthology K12600; SKI3, superkiller protein 3
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G76630 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os01g68680.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a003254 , Zm00025a042850 , Zm00025a032522
Brachypodium PNT67844 , PNT67843 , KQJ97714 , KQJ97713
Barley HORVU1Hr1G053190.64 , HORVU1Hr1G053190.65 , HORVU1Hr1G053190.66 , HORVU1Hr1G053190.67 , HORVU1Hr1G053190.60 , HORVU1Hr1G053190.61 , HORVU1Hr1G053190.62 , HORVU1Hr1G053190.63 , HORVU1Hr1G053190.68 , HORVU1Hr1G053190.69 , HORVU1Hr1G053190.9 , HORVU1Hr1G053190.18 , HORVU1Hr1G053190.17 , HORVU1Hr1G053190.16 , HORVU1Hr1G053190.13 , HORVU1Hr1G053190.25 , HORVU1Hr1G053190.26 , HORVU1Hr1G053190.27 , HORVU1Hr1G053190.59 , HORVU1Hr1G053190.58 , HORVU1Hr1G053190.51 , HORVU1Hr1G053190.50 , HORVU1Hr1G053190.53 , HORVU1Hr1G053190.52 , HORVU1Hr1G053190.55 , HORVU1Hr1G053190.54 , HORVU1Hr1G053190.57 , HORVU1Hr1G053190.56 , HORVU1Hr1G053190.39 , HORVU1Hr1G053190.38 , HORVU1Hr1G053190.31 , HORVU1Hr1G053190.30 , HORVU1Hr1G053190.37 , HORVU1Hr1G053190.36 , HORVU1Hr1G053190.35 , HORVU1Hr1G053190.48 , HORVU1Hr1G053190.49 , HORVU1Hr1G053190.46 , HORVU1Hr1G053190.47 , HORVU1Hr1G053190.44 , HORVU1Hr1G053190.45 , HORVU1Hr1G053190.42 , HORVU1Hr1G053190.43 , HORVU1Hr1G053190.40 , HORVU1Hr1G053190.41 , HORVU1Hr1G053190.72 , HORVU1Hr1G053190.71 , HORVU1Hr1G053190.70 , HORVU1Hr1G053190.15 , HORVU1Hr1G053190.14 , HORVU1Hr1G053190.29 , HORVU1Hr1G053190.20 , HORVU1Hr1G053190.21 , HORVU1Hr1G053190.22
Wheat TraesCS1B02G221400 , TraesCS1B02G221400 , TraesCS1B02G221400 , TraesCS1A02G207700 , TraesCS1A02G207700 , TraesCS1D02G211000 , TraesCS1D02G211000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G138000 expressed protein -
2 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
3 Sobic.001G303675 - -
4 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
5 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
6 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
7 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
8 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
9 Sobic.001G094000 expressed protein -
10 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
11 Sobic.001G134300 - K17613: calcineurin-binding protein cabin-1
12 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
13 Sobic.009G210500 expressed protein -
14 Sobic.004G156500 expressed protein -
15 Sobic.002G264200 RNA recognition motif containing protein, expressed -
16 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
17 Sobic.006G046700 vacuolar protein sorting-associated protein 11, putative, expressed -
18 Sobic.006G032400 expressed protein -
19 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1
20 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -


Gene co-expression network
sample Sobic001G306900 Sobic001G306900 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic010G065300 Sobic010G065300 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G511500 Sobic001G511500 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic004G138000--Sobic001G306900 Sobic010G201500 Sobic010G201500 Sobic004G138000--Sobic010G201500 Sobic004G138000--Sobic007G065400 Sobic004G138000--Sobic004G145500 Sobic004G138000--Sobic001G094000 Sobic008G009700 Sobic008G009700 Sobic004G138000--Sobic008G009700 Sobic004G138000--Sobic010G065300 Sobic004G138000--Sobic001G511500 Sobic008G063000 Sobic008G063000 Sobic004G138000--Sobic008G063000 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic001G303675--Sobic001G306900 Sobic001G303675--Sobic001G094000 Sobic002G144933 Sobic002G144933 Sobic001G303675--Sobic002G144933 Sobic009G100050 Sobic009G100050 Sobic001G303675--Sobic009G100050 Sobic005G015900 Sobic005G015900 Sobic001G303675--Sobic005G015900 Sobic002G320500 Sobic002G320500 Sobic001G303675--Sobic002G320500 Sobic004G096500 Sobic004G096500 Sobic001G303675--Sobic004G096500 Sobic002G151600 Sobic002G151600 Sobic001G303675--Sobic002G151600 Sobic003G170100 Sobic003G170100 Sobic001G303675--Sobic003G170100 Sobic002G006900 Sobic002G006900 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic004G031700 Sobic004G031700 Sobic001G511500--Sobic004G031700 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic004G145500--Sobic007G065400 Sobic008G173900 Sobic008G173900 Sobic004G145500--Sobic008G173900 Sobic004G145500--Sobic002G144933 Sobic004G145500--Sobic008G009700 Sobic004G145500--Sobic001G306900 Sobic003G200200 Sobic003G200200 Sobic004G145500--Sobic003G200200 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic001G241200 Sobic001G241200 Sobic004G145500--Sobic001G241200 Sobic002G071500 Sobic002G071500 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic002G153700--Sobic010G065300 Sobic002G153700--Sobic009G119000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic002G153700--Sobic001G306900 Sobic001G206100 Sobic001G206100 Sobic006G013500--Sobic001G206100 Sobic001G257300 Sobic001G257300 Sobic006G013500--Sobic001G257300 Sobic006G013500--Sobic001G306900 Sobic006G080300 Sobic006G080300 Sobic006G013500--Sobic006G080300 Sobic006G013500--Sobic004G031700 Sobic009G000500 Sobic009G000500 Sobic006G013500--Sobic009G000500 Sobic003G197800 Sobic003G197800 Sobic006G013500--Sobic003G197800 Sobic006G013500--Sobic001G094000 Sobic006G046700 Sobic006G046700 Sobic006G013500--Sobic006G046700 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic001G094000--Sobic004G031700 Sobic001G094000--Sobic006G080300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.