Gene annotation
Transcriptome id Sobic.004G138000.3,Sobic.004G138000.1,Sobic.004G138000.2
Synonym Sb04g016320
Functional annotation expressed protein
UniProt C5Y112
Pfam PF12767
Panther DB PTHR21277 PTHR21277:SF10
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G24530 : -
RAP-DB (Rice) LOC_Os04g21650.2,LOC_Os04g21650.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
2 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
3 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
4 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
5 Sobic.001G094000 expressed protein -
6 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
7 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
8 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
9 Sobic.008G063000 transcriptional corepressor SEUSS, putative, expressed -
10 Sobic.009G210500 expressed protein -
11 Sobic.006G013500 hydrolase/ zinc ion binding protein, putative, expressed K15442: TAD3, tRNA-specific adenosine deaminase 3
12 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
13 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
14 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
15 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
16 Sobic.002G161000 RNA recognition motif containing protein, expressed -
17 Sobic.002G191800 - -
18 Sobic.004G156500 expressed protein -
19 Sobic.003G036900 glycine-rich protein, putative, expressed -
20 Sobic.002G264200 RNA recognition motif containing protein, expressed -


Gene co-expression network
sample Sobic004G138000 Sobic004G138000 Sobic001G306900 Sobic001G306900 Sobic004G138000--Sobic001G306900 Sobic010G201500 Sobic010G201500 Sobic004G138000--Sobic010G201500 Sobic007G065400 Sobic007G065400 Sobic004G138000--Sobic007G065400 Sobic004G145500 Sobic004G145500 Sobic004G138000--Sobic004G145500 Sobic001G094000 Sobic001G094000 Sobic004G138000--Sobic001G094000 Sobic008G009700 Sobic008G009700 Sobic004G138000--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic004G138000--Sobic010G065300 Sobic001G511500 Sobic001G511500 Sobic004G138000--Sobic001G511500 Sobic008G063000 Sobic008G063000 Sobic004G138000--Sobic008G063000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic001G306900--Sobic007G065400 Sobic001G306900--Sobic001G511500 Sobic001G306900--Sobic004G145500 Sobic002G153700 Sobic002G153700 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G306900--Sobic001G094000 Sobic002G071500 Sobic002G071500 Sobic010G201500--Sobic002G071500 Sobic010G201500--Sobic007G065400 Sobic004G271000 Sobic004G271000 Sobic010G201500--Sobic004G271000 Sobic003G372700 Sobic003G372700 Sobic010G201500--Sobic003G372700 Sobic002G006900 Sobic002G006900 Sobic010G201500--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic010G201500--Sobic002G191800 Sobic010G201500--Sobic010G065300 Sobic010G069100 Sobic010G069100 Sobic010G201500--Sobic010G069100 Sobic001G155000 Sobic001G155000 Sobic010G201500--Sobic001G155000 Sobic007G065400--Sobic002G006900 Sobic007G065400--Sobic002G191800 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic004G145500--Sobic007G065400 Sobic008G173900 Sobic008G173900 Sobic004G145500--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic004G145500--Sobic002G144933 Sobic004G145500--Sobic008G009700 Sobic004G145500--Sobic001G306900 Sobic003G200200 Sobic003G200200 Sobic004G145500--Sobic003G200200 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic001G241200 Sobic001G241200 Sobic004G145500--Sobic001G241200 Sobic007G011400 Sobic007G011400 Sobic001G094000--Sobic007G011400 Sobic009G040700 Sobic009G040700 Sobic001G094000--Sobic009G040700 Sobic001G477800 Sobic001G477800 Sobic001G094000--Sobic001G477800 Sobic002G157000 Sobic002G157000 Sobic001G094000--Sobic002G157000 Sobic003G268300 Sobic003G268300 Sobic001G094000--Sobic003G268300 Sobic002G157300 Sobic002G157300 Sobic001G094000--Sobic002G157300 Sobic003G187400 Sobic003G187400 Sobic001G094000--Sobic003G187400 Sobic004G031700 Sobic004G031700 Sobic001G094000--Sobic004G031700 Sobic006G080300 Sobic006G080300 Sobic001G094000--Sobic006G080300 Sobic002G309600 Sobic002G309600 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic008G009700--Sobic005G112300 Sobic008G009700--Sobic007G065400 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic008G009700--Sobic002G153700 Sobic008G009700--Sobic010G065300 Sobic008G009700--Sobic001G241200 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic009G119000 Sobic009G119000 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic007G000100 Sobic007G000100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic006G128900 Sobic006G128900 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G511500--Sobic001G306900 Sobic003G445400 Sobic003G445400 Sobic001G511500--Sobic003G445400 Sobic003G307000 Sobic003G307000 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic008G063000--Sobic001G094000 Sobic008G063000--Sobic003G268300 Sobic006G246900 Sobic006G246900 Sobic008G063000--Sobic006G246900 Sobic008G063000--Sobic002G157000 Sobic008G063000--Sobic003G200200 Sobic008G063000--Sobic008G173900 Sobic008G063000--Sobic002G006900 Sobic008G063000--Sobic002G144933 Sobic008G063000--Sobic004G145500
Octagon: transcription factors


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