Gene annotation
Transcriptome id Sobic.002G006900.1,Sobic.002G006900.2
Synonym Sb02g000810, SRFR1
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1B6Q8N1 , A0A1B6Q8L6
Pfam PF13371 PF13414
Panther DB PTHR23083 PTHR23083:SF443
NCBI CDD KOG0547; Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37460 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g02300.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016256
Brachypodium KQK21157 , PNT77196 , PNT77195
Barley HORVU2Hr1G063340.4 , HORVU2Hr1G063340.5 , HORVU2Hr1G063340.6 , HORVU2Hr1G063340.7 , HORVU2Hr1G063340.1 , HORVU2Hr1G063340.2 , HORVU2Hr1G063340.3 , HORVU2Hr1G063340.8 , HORVU2Hr1G063340.9 , HORVU2Hr1G063340.24 , HORVU2Hr1G063340.23 , HORVU2Hr1G063340.22 , HORVU2Hr1G063340.21 , HORVU2Hr1G063340.20 , HORVU2Hr1G063340.16 , HORVU2Hr1G063340.17 , HORVU2Hr1G063340.14 , HORVU2Hr1G063340.15 , HORVU2Hr1G063340.12 , HORVU2Hr1G063340.13 , HORVU2Hr1G063340.10 , HORVU2Hr1G063340.11 , HORVU2Hr1G063340.18 , HORVU2Hr1G063340.19 , HORVU2Hr1G063340.29 , HORVU2Hr1G063340.28 , HORVU2Hr1G063340.27 , HORVU2Hr1G063340.26 , HORVU2Hr1G063340.25 , HORVU2Hr1G063340.30 , HORVU2Hr1G063340.31 , HORVU2Hr1G063340.32
Wheat TraesCS2D02G260800 , TraesCS2B02G279000 , TraesCS2A02G263200
Populus -


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cDNA sequences
Sobic.002G006900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
2 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
3 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
4 Sobic.003G372700 expressed protein -
5 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
6 Sobic.001G155000 DNA-directed RNA polymerase II subunit RPB2, putative, expressed K03010: RPB2, DNA-directed RNA polymerase II subunit RPB2
7 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
8 Sobic.001G214300 expressed protein -
9 Sobic.001G512700 myb/SANT domain protein, putative, expressed -
10 Sobic.006G048500 - -
11 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
12 Sobic.002G243900 - -
13 Sobic.008G028700 SET domain containing protein, expressed -
14 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
15 Sobic.007G096600 - -
16 Sobic.004G341900 lecithine cholesterol acyltransferase, putative, expressed -
17 Sobic.003G176500 - -
18 Sobic.008G173900 "OsPPKL3(Ortholog in rice:Zhan et al., 2012)"(PubMedID : 31659913)@serine/threonine-protein phosphatase BSL2, putative, expressed -
19 Sobic.001G497300 protein kinase domain containing protein, expressed -
20 Sobic.001G205200 expressed protein -


Gene co-expression network
sample Sobic002G006900 Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic003G372700 Sobic003G372700 Sobic002G006900--Sobic003G372700 Sobic009G040600 Sobic009G040600 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G309600 Sobic002G309600 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic008G047800--Sobic002G006900 Sobic004G084300 Sobic004G084300 Sobic008G047800--Sobic004G084300 Sobic008G047800--Sobic001G512700 Sobic008G047800--Sobic001G155000 Sobic008G047800--Sobic009G040600 Sobic007G011300 Sobic007G011300 Sobic008G047800--Sobic007G011300 Sobic007G217000 Sobic007G217000 Sobic008G047800--Sobic007G217000 Sobic004G274200 Sobic004G274200 Sobic008G047800--Sobic004G274200 Sobic008G047800--Sobic002G309600 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic002G157000 Sobic002G157000 Sobic003G200200--Sobic002G157000 Sobic003G200200--Sobic002G006900 Sobic003G268300 Sobic003G268300 Sobic003G200200--Sobic003G268300 Sobic001G251700 Sobic001G251700 Sobic003G200200--Sobic001G251700 Sobic007G096600 Sobic007G096600 Sobic003G200200--Sobic007G096600 Sobic002G248400 Sobic002G248400 Sobic003G200200--Sobic002G248400 Sobic003G200200--Sobic001G155000 Sobic008G173900 Sobic008G173900 Sobic003G200200--Sobic008G173900 Sobic003G170100 Sobic003G170100 Sobic003G200200--Sobic003G170100 Sobic003G372700--Sobic002G006900 Sobic003G372700--Sobic003G119000 Sobic003G372700--Sobic007G065400 Sobic005G112300 Sobic005G112300 Sobic003G372700--Sobic005G112300 Sobic003G372700--Sobic002G191800 Sobic003G372700--Sobic009G040600 Sobic003G372700--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic003G372700--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic003G372700--Sobic001G474600 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic001G155000--Sobic008G047800 Sobic001G155000--Sobic002G006900 Sobic001G155000--Sobic003G200200 Sobic001G155000--Sobic009G040600 Sobic001G222500 Sobic001G222500 Sobic001G155000--Sobic001G222500 Sobic001G155000--Sobic007G011300 Sobic008G153000 Sobic008G153000 Sobic001G155000--Sobic008G153000 Sobic010G053800 Sobic010G053800 Sobic001G155000--Sobic010G053800 Sobic001G155000--Sobic007G217000 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic004G341900 Sobic004G341900 Sobic001G214300--Sobic004G341900 Sobic003G148000 Sobic003G148000 Sobic001G214300--Sobic003G148000 Sobic001G214300--Sobic002G006900 Sobic005G144400 Sobic005G144400 Sobic001G214300--Sobic005G144400 Sobic003G176500 Sobic003G176500 Sobic001G214300--Sobic003G176500 Sobic003G029700 Sobic003G029700 Sobic001G214300--Sobic003G029700 Sobic002G243900 Sobic002G243900 Sobic001G214300--Sobic002G243900 Sobic006G048500 Sobic006G048500 Sobic001G214300--Sobic006G048500 Sobic001G214300--Sobic007G096600 Sobic001G512700--Sobic008G047800 Sobic001G512700--Sobic002G006900 Sobic003G248200 Sobic003G248200 Sobic001G512700--Sobic003G248200 Sobic001G497300 Sobic001G497300 Sobic001G512700--Sobic001G497300 Sobic007G118600 Sobic007G118600 Sobic001G512700--Sobic007G118600 Sobic004G021100 Sobic004G021100 Sobic001G512700--Sobic004G021100 Sobic005G045300 Sobic005G045300 Sobic001G512700--Sobic005G045300 Sobic002G297200 Sobic002G297200 Sobic001G512700--Sobic002G297200 Sobic008G067600 Sobic008G067600 Sobic001G512700--Sobic008G067600
Octagon: transcription factors


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