Gene annotation
Transcriptome id Sobic.002G309600.2,Sobic.002G309600.1
Synonym UPF1, LBA1, ATUPF1, Sb02g033940
Functional annotation DNA-binding protein, putative, expressed
UniProt C5X983 , C5X9A0
Pfam PF13086 PF09416
Panther DB PTHR10887 PTHR10887:SF378
NCBI CDD -
KEGG Orthology K14326; UPF1, regulator of nonsense transcripts 1
Gene Ontology GO:0008270; zinc ion binding GO:0005737cytoplasm GO:0005524ATP binding GO:0004386helicase activity GO:0003677DNA binding GO:0000184nuclear-transcribed mRNA catabolic process, nonsense-mediated decay


Orthologs (automatic annotation)
TAIR AT5G47010 : RNA helicase, putative
RAP-DB (Rice) LOC_Os07g31340.1 : regulator of nonsense transcripts 1, putative, expressed
MaizeGDB (Corn) Zm00025a048123 , Zm00025a014725
Brachypodium KQK16145
Barley HORVU2Hr1G055380.1 , HORVU2Hr1G055380.3 , HORVU2Hr1G055380.2 , HORVU2Hr1G055380.5 , HORVU2Hr1G055380.4 , HORVU2Hr1G055380.7 , HORVU2Hr1G055380.6 , HORVU2Hr1G055380.9 , HORVU2Hr1G055380.8 , HORVU2Hr1G055380.20 , HORVU2Hr1G055380.21 , HORVU2Hr1G055380.22 , HORVU2Hr1G055380.23 , HORVU2Hr1G055380.24 , HORVU2Hr1G055380.26 , HORVU2Hr1G055380.27 , HORVU2Hr1G055380.28 , HORVU2Hr1G055380.29 , HORVU2Hr1G055380.19 , HORVU2Hr1G055380.18 , HORVU2Hr1G055380.33 , HORVU2Hr1G055380.37 , HORVU2Hr1G055380.36 , HORVU2Hr1G055380.39 , HORVU2Hr1G055380.38 , HORVU2Hr1G055380.15 , HORVU2Hr1G055380.14 , HORVU2Hr1G055380.17 , HORVU2Hr1G055380.16 , HORVU2Hr1G055380.11 , HORVU2Hr1G055380.10 , HORVU2Hr1G055380.13 , HORVU2Hr1G055380.12 , HORVU2Hr1G055380.25 , HORVU2Hr1G055380.51 , HORVU2Hr1G055380.50 , HORVU2Hr1G055380.52 , HORVU2Hr1G055380.32 , HORVU2Hr1G055380.30 , HORVU2Hr1G055380.35 , HORVU2Hr1G055380.31 , HORVU2Hr1G055380.34 , HORVU2Hr1G055380.46 , HORVU2Hr1G055380.47 , HORVU2Hr1G055380.44 , HORVU2Hr1G055380.45 , HORVU2Hr1G055380.42 , HORVU2Hr1G055380.43 , HORVU2Hr1G055380.40 , HORVU2Hr1G055380.41 , HORVU2Hr1G055380.48 , HORVU2Hr1G055380.49
Wheat TraesCS2D02G241300 , TraesCS2D02G241300 , TraesCS2D02G241300 , TraesCS2B02G257200 , TraesCS2B02G257200 , TraesCS2B02G257200 , TraesCS2A02G228000 , TraesCS2A02G228000 , TraesCS2A02G228000 , TraesCS2A02G228000
Populus -


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cDNA sequences
Sobic.002G309600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
2 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
3 Sobic.007G117400 expressed protein -
4 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
5 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
6 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
7 Sobic.004G065100 RNA recognition motif, putative, expressed K12842: U2-associated protein SR140
8 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
9 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
11 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
12 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
13 Sobic.001G241200 protein kinase domain containing protein, expressed -
14 Sobic.002G404700 expressed protein K11367: chromodomain-helicase-DNA-binding protein 1
15 Sobic.001G289600 BAH domain containing protein, putative, expressed -
16 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
17 Sobic.001G540400 expressed protein -
18 Sobic.009G191000 MATH domain containing protein, expressed -
19 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
20 Sobic.004G314000 expressed protein -


Gene co-expression network
sample Sobic002G309600 Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G134200 Sobic002G134200 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic005G112300 Sobic005G112300 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G006900 Sobic002G006900 Sobic002G309600--Sobic002G006900 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic006G216800 Sobic006G216800 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic007G117400--Sobic002G309600 Sobic001G241200 Sobic001G241200 Sobic007G117400--Sobic001G241200 Sobic007G117400--Sobic004G065100 Sobic007G161000 Sobic007G161000 Sobic007G117400--Sobic007G161000 Sobic007G117400--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic007G117400--Sobic004G009600 Sobic007G117400--Sobic001G154900 Sobic009G040600 Sobic009G040600 Sobic007G117400--Sobic009G040600 Sobic007G117400--Sobic005G008800 Sobic008G009700--Sobic002G309600 Sobic008G009700--Sobic005G008800 Sobic008G009700--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic008G009700--Sobic007G065400 Sobic002G071500 Sobic002G071500 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic002G153700 Sobic002G153700 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic008G009700--Sobic001G241200 Sobic001G071400--Sobic002G134200 Sobic001G071400--Sobic002G309600 Sobic001G071400--Sobic003G280800 Sobic001G071400--Sobic008G047800 Sobic001G071400--Sobic009G191000 Sobic001G219600 Sobic001G219600 Sobic001G071400--Sobic001G219600 Sobic001G071400--Sobic005G112300 Sobic002G315200 Sobic002G315200 Sobic001G071400--Sobic002G315200 Sobic001G071400--Sobic002G008900 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500 Sobic004G065100--Sobic001G241200 Sobic004G065100--Sobic002G309600 Sobic004G065100--Sobic007G117400 Sobic004G065100--Sobic003G119000 Sobic005G027400 Sobic005G027400 Sobic004G065100--Sobic005G027400 Sobic004G065100--Sobic001G154900 Sobic004G065100--Sobic005G008800 Sobic005G104500 Sobic005G104500 Sobic004G065100--Sobic005G104500 Sobic004G065100--Sobic005G112300 Sobic001G154900--Sobic002G309600 Sobic001G289600 Sobic001G289600 Sobic001G154900--Sobic001G289600 Sobic001G154900--Sobic001G241200 Sobic010G069100 Sobic010G069100 Sobic001G154900--Sobic010G069100 Sobic001G154900--Sobic005G008800 Sobic001G154900--Sobic007G117400 Sobic001G154900--Sobic004G065100 Sobic001G154900--Sobic004G009600 Sobic001G154900--Sobic007G105100 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700
Octagon: transcription factors


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