Gene annotation
Transcriptome id Sobic.006G216800.1
Synonym Sb06g028670, PEX6
Functional annotation AAA family ATPase, putative, expressed
UniProt C5YG31
Pfam PF05496 PF00004
Panther DB PTHR23077 PTHR23077:SF9
NCBI CDD -
KEGG Orthology K13339; PEX6, peroxin-6
Gene Ontology GO:0009378; four-way junction helicase activity GO:0006310DNA recombination GO:0006281DNA repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT1G03000 : peroxin 6
RAP-DB (Rice) LOC_Os04g52690.2 : AAA family ATPase, putative, expressed
MaizeGDB (Corn) Zm00025a057043 , Zm00025a058203 , Zm00025a009974
Brachypodium KQJ84621 , PNT61855
Barley HORVU5Hr1G038960.1 , HORVU1Hr1G056250.1 , HORVU2Hr1G104530.3 , HORVU2Hr1G104530.2 , HORVU2Hr1G104530.1 , HORVU2Hr1G104530.6 , HORVU2Hr1G104530.5 , HORVU2Hr1G104530.4 , HORVU2Hr1G104530.9 , HORVU2Hr1G104530.8 , HORVU2Hr1G104530.7 , HORVU2Hr1G104530.11 , HORVU2Hr1G104530.10
Wheat TraesCS6A02G100900 , TraesCS4A02G037800 , TraesCS2B02G480000 , TraesCS2B02G480000 , TraesCS2B02G480000 , TraesCS2B02G480000 , TraesCS2A02G457600 , TraesCS2A02G457600 , TraesCS2A02G457600 , TraesCS2A02G174200 , TraesCS2D02G458300 , TraesCS2D02G458300 , TraesCS2D02G458300
Populus -


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cDNA sequences
Sobic.006G216800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
2 Sobic.007G116200 expressed protein K13217: PRPF39, pre-mRNA-processing factor 39
3 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
4 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
5 Sobic.003G332800 GTPase-activating protein, putative, expressed -
6 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
7 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
8 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
9 Sobic.010G277500 expressed protein -
10 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
11 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.002G343901 - -
13 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
14 Sobic.001G036050 - -
15 Sobic.010G279450 - K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
16 Sobic.008G162900 peroxisome assembly protein, putative, expressed K06664: PEX2, peroxin-2
17 Sobic.007G167500 expressed protein -
18 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
19 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
20 Sobic.009G209300 starch synthase, putative, expressed -


Gene co-expression network
sample Sobic006G216800 Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic006G216800--Sobic002G133400 Sobic007G116200 Sobic007G116200 Sobic006G216800--Sobic007G116200 Sobic002G309600 Sobic002G309600 Sobic006G216800--Sobic002G309600 Sobic002G134200 Sobic002G134200 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic005G112300 Sobic005G112300 Sobic006G216800--Sobic005G112300 Sobic003G280800 Sobic003G280800 Sobic006G216800--Sobic003G280800 Sobic010G139000 Sobic010G139000 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500 Sobic002G133400--Sobic006G216800 Sobic002G133400--Sobic002G134200 Sobic002G006900 Sobic002G006900 Sobic002G133400--Sobic002G006900 Sobic008G047800 Sobic008G047800 Sobic002G133400--Sobic008G047800 Sobic007G065400 Sobic007G065400 Sobic002G133400--Sobic007G065400 Sobic002G133400--Sobic002G309600 Sobic002G133400--Sobic010G139000 Sobic001G036050 Sobic001G036050 Sobic002G133400--Sobic001G036050 Sobic006G048500 Sobic006G048500 Sobic002G133400--Sobic006G048500 Sobic007G116200--Sobic006G216800 Sobic010G010700 Sobic010G010700 Sobic007G116200--Sobic010G010700 Sobic007G116200--Sobic002G134200 Sobic006G182900 Sobic006G182900 Sobic007G116200--Sobic006G182900 Sobic004G359800 Sobic004G359800 Sobic007G116200--Sobic004G359800 Sobic007G116200--Sobic010G139000 Sobic010G256700 Sobic010G256700 Sobic007G116200--Sobic010G256700 Sobic004G209600 Sobic004G209600 Sobic007G116200--Sobic004G209600 Sobic007G116200--Sobic003G280800 Sobic002G309600--Sobic003G280800 Sobic002G309600--Sobic002G134200 Sobic007G117400 Sobic007G117400 Sobic002G309600--Sobic007G117400 Sobic008G009700 Sobic008G009700 Sobic002G309600--Sobic008G009700 Sobic001G071400 Sobic001G071400 Sobic002G309600--Sobic001G071400 Sobic002G309600--Sobic005G112300 Sobic004G065100 Sobic004G065100 Sobic002G309600--Sobic004G065100 Sobic001G154900 Sobic001G154900 Sobic002G309600--Sobic001G154900 Sobic002G309600--Sobic002G006900 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G134200--Sobic002G133400 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900 Sobic007G096600 Sobic007G096600 Sobic003G332800--Sobic007G096600 Sobic003G332800--Sobic006G216800 Sobic003G148000 Sobic003G148000 Sobic003G332800--Sobic003G148000 Sobic003G332800--Sobic002G006900 Sobic007G167500 Sobic007G167500 Sobic003G332800--Sobic007G167500 Sobic009G209300 Sobic009G209300 Sobic003G332800--Sobic009G209300 Sobic002G243900 Sobic002G243900 Sobic003G332800--Sobic002G243900 Sobic003G332800--Sobic007G065400 Sobic003G176500 Sobic003G176500 Sobic003G332800--Sobic003G176500 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic002G071500 Sobic002G071500 Sobic005G112300--Sobic002G071500 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic010G139000--Sobic001G036050 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic004G208900 Sobic004G208900 Sobic010G277500--Sobic004G208900 Sobic010G277500--Sobic006G209850 Sobic010G277500--Sobic007G065400 Sobic009G260500 Sobic009G260500 Sobic010G277500--Sobic009G260500 Sobic010G277500--Sobic003G280800 Sobic004G009600 Sobic004G009600 Sobic010G277500--Sobic004G009600 Sobic008G028700 Sobic008G028700 Sobic010G277500--Sobic008G028700 Sobic004G258700 Sobic004G258700 Sobic010G277500--Sobic004G258700 Sobic010G277500--Sobic006G216800
Octagon: transcription factors


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