Gene annotation
Transcriptome id Sobic.007G116200.1
Synonym Sb07g019230, ATPRP39-2, PRP39-2
Functional annotation expressed protein
UniProt A0A1B6PHM9
Pfam -
Panther DB PTHR17204 PTHR17204:SF18
NCBI CDD KOG1258; mRNA processing protein
KEGG Orthology K13217; PRPF39, pre-mRNA-processing factor 39
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G46400 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os08g29124.1 : expressed protein
MaizeGDB (Corn) Zm00025a006126 , Zm00025a006114
Brachypodium KQJ98124
Barley HORVU2Hr1G045860.11 , HORVU2Hr1G045860.12 , HORVU2Hr1G045860.1 , HORVU2Hr1G045860.3 , HORVU2Hr1G045860.4 , HORVU2Hr1G045860.9
Wheat TraesCS2D02G226200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G216800 AAA family ATPase, putative, expressed K13339: PEX6, peroxin-6
2 Sobic.010G010700 PHD-finger family protein, expressed -
3 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
4 Sobic.006G182900 expressed protein -
5 Sobic.004G359800 inositol-1-monophosphatase, putative, expressed -
6 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
7 Sobic.010G256700 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
8 Sobic.004G209600 SWIM zinc finger family protein, putative, expressed -
9 Sobic.003G280800 RNA recognition motif family protein, expressed K13094: RNA-binding protein 5/10
10 Sobic.001G071400 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
11 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
12 Sobic.002G143500 sulfate transporter 4.1, chloroplast precursor, putative, expressed K18059: sulfate transporter 4
13 Sobic.002G008900 sister chromatid cohesion 2, putative, expressed K06672: SCC2, cohesin loading factor subunit SCC2
14 Sobic.003G429650 - -
15 Sobic.010G277500 expressed protein -
16 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
17 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
18 Sobic.003G332800 GTPase-activating protein, putative, expressed -
19 Sobic.002G343901 - -
20 Sobic.009G209300 starch synthase, putative, expressed -


Gene co-expression network
sample Sobic007G116200 Sobic007G116200 Sobic006G216800 Sobic006G216800 Sobic007G116200--Sobic006G216800 Sobic010G010700 Sobic010G010700 Sobic007G116200--Sobic010G010700 Sobic002G134200 Sobic002G134200 Sobic007G116200--Sobic002G134200 Sobic006G182900 Sobic006G182900 Sobic007G116200--Sobic006G182900 Sobic004G359800 Sobic004G359800 Sobic007G116200--Sobic004G359800 Sobic010G139000 Sobic010G139000 Sobic007G116200--Sobic010G139000 Sobic010G256700 Sobic010G256700 Sobic007G116200--Sobic010G256700 Sobic004G209600 Sobic004G209600 Sobic007G116200--Sobic004G209600 Sobic003G280800 Sobic003G280800 Sobic007G116200--Sobic003G280800 Sobic002G133400 Sobic002G133400 Sobic006G216800--Sobic002G133400 Sobic006G216800--Sobic007G116200 Sobic002G309600 Sobic002G309600 Sobic006G216800--Sobic002G309600 Sobic006G216800--Sobic002G134200 Sobic003G332800 Sobic003G332800 Sobic006G216800--Sobic003G332800 Sobic005G112300 Sobic005G112300 Sobic006G216800--Sobic005G112300 Sobic006G216800--Sobic003G280800 Sobic006G216800--Sobic010G139000 Sobic010G277500 Sobic010G277500 Sobic006G216800--Sobic010G277500 Sobic010G206900 Sobic010G206900 Sobic010G010700--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic010G010700--Sobic004G034900 Sobic004G276400 Sobic004G276400 Sobic010G010700--Sobic004G276400 Sobic001G194200 Sobic001G194200 Sobic010G010700--Sobic001G194200 Sobic007G062800 Sobic007G062800 Sobic010G010700--Sobic007G062800 Sobic002G008900 Sobic002G008900 Sobic010G010700--Sobic002G008900 Sobic010G010700--Sobic005G112300 Sobic008G001200 Sobic008G001200 Sobic010G010700--Sobic008G001200 Sobic003G186000 Sobic003G186000 Sobic010G010700--Sobic003G186000 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G134200--Sobic002G309600 Sobic002G134200--Sobic003G280800 Sobic002G134200--Sobic006G216800 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic005G008800 Sobic005G008800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G134200--Sobic002G008900 Sobic003G429650 Sobic003G429650 Sobic006G182900--Sobic003G429650 Sobic006G048500 Sobic006G048500 Sobic006G182900--Sobic006G048500 Sobic007G161000 Sobic007G161000 Sobic006G182900--Sobic007G161000 Sobic001G365900 Sobic001G365900 Sobic006G182900--Sobic001G365900 Sobic006G182900--Sobic007G116200 Sobic004G096600 Sobic004G096600 Sobic006G182900--Sobic004G096600 Sobic006G182900--Sobic002G134200 Sobic001G214300 Sobic001G214300 Sobic006G182900--Sobic001G214300 Sobic009G209300 Sobic009G209300 Sobic006G182900--Sobic009G209300 Sobic004G359800--Sobic007G116200 Sobic002G169633 Sobic002G169633 Sobic004G359800--Sobic002G169633 Sobic003G138500 Sobic003G138500 Sobic004G359800--Sobic003G138500 Sobic004G359800--Sobic002G134200 Sobic004G359800--Sobic003G280800 Sobic004G359800--Sobic010G139000 Sobic004G359800--Sobic006G182900 Sobic010G176550 Sobic010G176550 Sobic004G359800--Sobic010G176550 Sobic002G127550 Sobic002G127550 Sobic004G359800--Sobic002G127550 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G139000--Sobic010G010700 Sobic010G139000--Sobic005G008800 Sobic010G256700--Sobic007G116200 Sobic003G396200 Sobic003G396200 Sobic010G256700--Sobic003G396200 Sobic010G256700--Sobic006G182900 Sobic001G159400 Sobic001G159400 Sobic010G256700--Sobic001G159400 Sobic010G248700 Sobic010G248700 Sobic010G256700--Sobic010G248700 Sobic007G193700 Sobic007G193700 Sobic010G256700--Sobic007G193700 Sobic006G133900 Sobic006G133900 Sobic010G256700--Sobic006G133900 Sobic001G454500 Sobic001G454500 Sobic010G256700--Sobic001G454500 Sobic002G104100 Sobic002G104100 Sobic010G256700--Sobic002G104100 Sobic004G209600--Sobic010G139000 Sobic004G209600--Sobic004G314000 Sobic004G209600--Sobic010G010700 Sobic007G117400 Sobic007G117400 Sobic004G209600--Sobic007G117400 Sobic004G209600--Sobic005G008800 Sobic004G209600--Sobic002G134200 Sobic004G209600--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic004G209600--Sobic004G242400 Sobic004G209600--Sobic003G280800 Sobic003G280800--Sobic002G309600 Sobic003G280800--Sobic001G071400 Sobic003G280800--Sobic002G134200 Sobic006G209850 Sobic006G209850 Sobic003G280800--Sobic006G209850 Sobic003G119000 Sobic003G119000 Sobic003G280800--Sobic003G119000 Sobic001G474600 Sobic001G474600 Sobic003G280800--Sobic001G474600 Sobic003G280800--Sobic007G117400 Sobic003G280800--Sobic006G216800 Sobic003G372700 Sobic003G372700 Sobic003G280800--Sobic003G372700
Octagon: transcription factors


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