Gene annotation
Transcriptome id Sobic.007G065400.1,Sobic.007G065400.2
Synonym Sb07g005190, PCFS4
Functional annotation expressed protein
UniProt C5YI06
Pfam PF04818
Panther DB PTHR15921 PTHR15921:SF4
NCBI CDD KOG2071; mRNA cleavage and polyadenylation factor I/II complex, subunit Pcf11
KEGG Orthology K14400; pre-mRNA cleavage complex 2 protein Pcf11
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G04885 : PCF11P-similar protein 4
RAP-DB (Rice) LOC_Os08g08830.1 : expressed protein
MaizeGDB (Corn) Zm00025a054780 , Zm00025a029981
Brachypodium KQJ95127 , KQJ95126 , KQJ95125
Barley HORVU7Hr1G069840.10 , HORVU7Hr1G069840.1 , HORVU7Hr1G069840.2 , HORVU7Hr1G069840.3 , HORVU7Hr1G069840.4 , HORVU7Hr1G069840.5 , HORVU7Hr1G069840.6 , HORVU7Hr1G069840.7 , HORVU7Hr1G069840.8 , HORVU7Hr1G069840.9
Wheat TraesCS7D02G290300 , TraesCS7D02G290300 , TraesCS7D02G290300 , TraesCS7D02G290300 , TraesCS7B02G181900 , TraesCS7B02G181900 , TraesCS7B02G181900 , TraesCS7A02G294500 , TraesCS7A02G294500 , TraesCS7A02G294500 , TraesCS7A02G294500 , TraesCS7A02G294500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G006900 tetratricopeptide repeat domain containing protein, expressed -
2 Sobic.002G191800 - -
3 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
4 Sobic.009G040600 expressed protein K11647: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4
5 Sobic.004G145500 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
6 Sobic.009G210500 expressed protein -
7 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
8 Sobic.003G372700 expressed protein -
9 Sobic.008G028700 SET domain containing protein, expressed -
10 Sobic.010G277500 expressed protein -
11 Sobic.003G200200 SIT4 phosphatase-associated protein domain containing protein, expressed K15501: PPP6R3, serine/threonine-protein phosphatase 6 regulatory subunit 3
12 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
13 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
14 Sobic.010G069100 expressed protein -
15 Sobic.002G133400 CTR1-like protein kinase, putative, expressed K14510: serine/threonine-protein kinase CTR1
16 Sobic.008G113100 protein binding protein, putative, expressed -
17 Sobic.007G126600 RNA recognition motif containing protein, putative, expressed K12822: RBM25, RNA-binding protein 25
18 Sobic.002G264200 RNA recognition motif containing protein, expressed -
19 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
20 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3


Gene co-expression network
sample Sobic007G065400 Sobic007G065400 Sobic002G006900 Sobic002G006900 Sobic007G065400--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic007G065400--Sobic002G191800 Sobic008G009700 Sobic008G009700 Sobic007G065400--Sobic008G009700 Sobic009G040600 Sobic009G040600 Sobic007G065400--Sobic009G040600 Sobic004G145500 Sobic004G145500 Sobic007G065400--Sobic004G145500 Sobic009G210500 Sobic009G210500 Sobic007G065400--Sobic009G210500 Sobic003G119000 Sobic003G119000 Sobic007G065400--Sobic003G119000 Sobic003G372700 Sobic003G372700 Sobic007G065400--Sobic003G372700 Sobic008G028700 Sobic008G028700 Sobic007G065400--Sobic008G028700 Sobic008G047800 Sobic008G047800 Sobic002G006900--Sobic008G047800 Sobic002G006900--Sobic007G065400 Sobic003G200200 Sobic003G200200 Sobic002G006900--Sobic003G200200 Sobic002G006900--Sobic003G372700 Sobic002G006900--Sobic009G040600 Sobic001G155000 Sobic001G155000 Sobic002G006900--Sobic001G155000 Sobic002G309600 Sobic002G309600 Sobic002G006900--Sobic002G309600 Sobic001G214300 Sobic001G214300 Sobic002G006900--Sobic001G214300 Sobic001G512700 Sobic001G512700 Sobic002G006900--Sobic001G512700 Sobic002G191800--Sobic007G065400 Sobic002G191800--Sobic003G372700 Sobic002G180666 Sobic002G180666 Sobic002G191800--Sobic002G180666 Sobic002G191800--Sobic002G006900 Sobic010G201500 Sobic010G201500 Sobic002G191800--Sobic010G201500 Sobic001G241200 Sobic001G241200 Sobic002G191800--Sobic001G241200 Sobic007G096600 Sobic007G096600 Sobic002G191800--Sobic007G096600 Sobic010G277500 Sobic010G277500 Sobic002G191800--Sobic010G277500 Sobic002G191800--Sobic003G119000 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic005G112300 Sobic005G112300 Sobic008G009700--Sobic005G112300 Sobic008G009700--Sobic007G065400 Sobic002G071500 Sobic002G071500 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic002G153700 Sobic002G153700 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic008G009700--Sobic001G241200 Sobic004G009600 Sobic004G009600 Sobic009G040600--Sobic004G009600 Sobic009G040600--Sobic002G006900 Sobic009G040600--Sobic008G047800 Sobic004G208900 Sobic004G208900 Sobic009G040600--Sobic004G208900 Sobic009G040600--Sobic005G112300 Sobic009G040600--Sobic007G065400 Sobic009G040600--Sobic008G028700 Sobic009G040600--Sobic002G309600 Sobic009G126400 Sobic009G126400 Sobic009G040600--Sobic009G126400 Sobic004G145500--Sobic007G065400 Sobic008G173900 Sobic008G173900 Sobic004G145500--Sobic008G173900 Sobic002G144933 Sobic002G144933 Sobic004G145500--Sobic002G144933 Sobic004G145500--Sobic008G009700 Sobic001G306900 Sobic001G306900 Sobic004G145500--Sobic001G306900 Sobic004G145500--Sobic003G200200 Sobic004G145500--Sobic009G210500 Sobic010G136600 Sobic010G136600 Sobic004G145500--Sobic010G136600 Sobic004G145500--Sobic001G241200 Sobic002G320500 Sobic002G320500 Sobic009G210500--Sobic002G320500 Sobic009G210500--Sobic007G065400 Sobic002G157000 Sobic002G157000 Sobic009G210500--Sobic002G157000 Sobic006G032400 Sobic006G032400 Sobic009G210500--Sobic006G032400 Sobic003G268300 Sobic003G268300 Sobic009G210500--Sobic003G268300 Sobic001G407200 Sobic001G407200 Sobic009G210500--Sobic001G407200 Sobic007G167500 Sobic007G167500 Sobic009G210500--Sobic007G167500 Sobic001G090400 Sobic001G090400 Sobic009G210500--Sobic001G090400 Sobic009G210500--Sobic004G145500 Sobic003G119000--Sobic003G372700 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic003G372700--Sobic002G006900 Sobic003G372700--Sobic003G119000 Sobic003G372700--Sobic007G065400 Sobic003G372700--Sobic005G112300 Sobic003G372700--Sobic002G191800 Sobic003G372700--Sobic009G040600 Sobic003G372700--Sobic002G309600 Sobic003G372700--Sobic003G280800 Sobic001G474600 Sobic001G474600 Sobic003G372700--Sobic001G474600 Sobic010G279450 Sobic010G279450 Sobic008G028700--Sobic010G279450 Sobic008G028700--Sobic009G040600 Sobic008G028700--Sobic004G009600 Sobic004G258700 Sobic004G258700 Sobic008G028700--Sobic004G258700 Sobic008G028700--Sobic007G065400 Sobic010G139000 Sobic010G139000 Sobic008G028700--Sobic010G139000 Sobic008G028700--Sobic002G006900 Sobic002G145101 Sobic002G145101 Sobic008G028700--Sobic002G145101 Sobic008G113100 Sobic008G113100 Sobic008G028700--Sobic008G113100
Octagon: transcription factors


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