Gene annotation
Transcriptome id Sobic.002G071500.2,Sobic.002G071500.1
Synonym
Functional annotation cleavage and polyadenylation specificity factor, putative, expressed
UniProt A0A1B6Q9S1 , A0A1B6Q9P7
Pfam PF03178 PF10433
Panther DB PTHR10644 PTHR10644:SF6
NCBI CDD -
KEGG Orthology K12830; SF3B3, SAP130, splicing factor 3B subunit 3
Gene Ontology GO:0005634; nucleus GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G11960 : Cleavage and polyadenylation specificity factor (CPSF) A subunit protein
RAP-DB (Rice) LOC_Os07g10390.1 : cleavage and polyadenylation specificity factor, putative, expressed
MaizeGDB (Corn) Zm00025a045337
Brachypodium -
Barley HORVU2Hr1G055870.22 , HORVU2Hr1G055870.23 , HORVU2Hr1G055870.20 , HORVU2Hr1G055870.21 , HORVU2Hr1G055870.26 , HORVU2Hr1G055870.24 , HORVU2Hr1G055870.3 , HORVU2Hr1G055870.2 , HORVU2Hr1G055870.1 , HORVU2Hr1G055870.7 , HORVU2Hr1G055870.6 , HORVU2Hr1G055870.5 , HORVU2Hr1G055870.4 , HORVU2Hr1G055870.9 , HORVU2Hr1G055870.8 , HORVU2Hr1G055870.27 , HORVU2Hr1G055870.13 , HORVU2Hr1G055870.12 , HORVU2Hr1G055870.11 , HORVU2Hr1G055870.10 , HORVU2Hr1G055870.17 , HORVU2Hr1G055870.16 , HORVU2Hr1G055870.15 , HORVU2Hr1G055870.14 , HORVU2Hr1G055870.19 , HORVU2Hr1G055870.25 , HORVU2Hr1G055870.18
Wheat TraesCS2A02G243300 , TraesCS2A02G243300 , TraesCS2A02G243300 , TraesCS2A02G243300 , TraesCS2A02G243300 , TraesCS2B02G258400 , TraesCS2B02G258400 , TraesCS2D02G245600 , TraesCS2D02G245600 , TraesCS2D02G245600 , TraesCS2D02G245600 , TraesCS2D02G245600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
2 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
3 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
4 Sobic.010G116600 FHA domain containing protein, putative, expressed -
5 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
6 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
7 Sobic.010G069100 expressed protein -
8 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
9 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
10 Sobic.001G241200 protein kinase domain containing protein, expressed -
11 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
12 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
13 Sobic.002G264200 RNA recognition motif containing protein, expressed -
14 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
15 Sobic.001G363500 DIRP family protein, putative, expressed -
16 Sobic.001G219900 expressed protein -
17 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
18 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
19 Sobic.001G540400 expressed protein -
20 Sobic.007G062800 SET domain containing protein, expressed -


Gene co-expression network
sample Sobic002G071500 Sobic002G071500 Sobic005G112300 Sobic005G112300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic008G009700 Sobic008G009700 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G153700 Sobic002G153700 Sobic002G071500--Sobic002G153700 Sobic010G069100 Sobic010G069100 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic007G062800 Sobic007G062800 Sobic005G112300--Sobic007G062800 Sobic010G112100 Sobic010G112100 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic007G105100 Sobic007G105100 Sobic005G112300--Sobic007G105100 Sobic001G540400 Sobic001G540400 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500 Sobic003G408600--Sobic001G540400 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic007G163100 Sobic007G163100 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic003G408600--Sobic002G071500 Sobic002G045600 Sobic002G045600 Sobic003G408600--Sobic002G045600 Sobic002G309600 Sobic002G309600 Sobic008G009700--Sobic002G309600 Sobic008G009700--Sobic005G008800 Sobic008G009700--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic008G009700--Sobic007G065400 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic008G009700--Sobic002G153700 Sobic010G065300 Sobic010G065300 Sobic008G009700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic008G009700--Sobic001G241200 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic003G093800 Sobic003G093800 Sobic010G116600--Sobic003G093800 Sobic009G044800 Sobic009G044800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G236400 Sobic010G236400 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic001G026200--Sobic002G071500 Sobic001G026200--Sobic010G116600 Sobic001G026200--Sobic002G153700 Sobic001G026200--Sobic010G236400 Sobic003G360400 Sobic003G360400 Sobic001G026200--Sobic003G360400 Sobic009G119000 Sobic009G119000 Sobic001G026200--Sobic009G119000 Sobic001G398800 Sobic001G398800 Sobic001G026200--Sobic001G398800 Sobic001G026200--Sobic003G119000 Sobic001G026200--Sobic009G044800 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic002G153700--Sobic008G009700 Sobic002G153700--Sobic010G065300 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic010G069100--Sobic002G071500 Sobic010G069100--Sobic002G264200 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic003G372700 Sobic003G372700 Sobic003G119000--Sobic003G372700 Sobic003G119000--Sobic002G071500 Sobic003G280800 Sobic003G280800 Sobic003G119000--Sobic003G280800 Sobic003G119000--Sobic007G065400 Sobic007G167500 Sobic007G167500 Sobic003G119000--Sobic007G167500 Sobic007G126600 Sobic007G126600 Sobic003G119000--Sobic007G126600 Sobic001G511500 Sobic001G511500 Sobic003G119000--Sobic001G511500 Sobic003G119000--Sobic002G309600 Sobic003G119000--Sobic001G241200 Sobic010G201500--Sobic002G071500 Sobic010G201500--Sobic007G065400 Sobic004G271000 Sobic004G271000 Sobic010G201500--Sobic004G271000 Sobic010G201500--Sobic003G372700 Sobic002G006900 Sobic002G006900 Sobic010G201500--Sobic002G006900 Sobic002G191800 Sobic002G191800 Sobic010G201500--Sobic002G191800 Sobic010G201500--Sobic010G065300 Sobic010G201500--Sobic010G069100 Sobic001G155000 Sobic001G155000 Sobic010G201500--Sobic001G155000
Octagon: transcription factors


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