Gene annotation
Transcriptome id Sobic.002G153700.1,Sobic.002G153700.2
Synonym SWP, ATMED14, MED14, Sb02g018910
Functional annotation SWP, putative, expressed
UniProt C5X869 , A0A1W0W471
Pfam PF08638
Panther DB PTHR12809 PTHR12809:SF3 PTHR12809:SF3 PTHR12809
NCBI CDD -
KEGG Orthology K15156; MED14, mediator of RNA polymerase II transcription subunit 14
Gene Ontology GO:0016592; mediator complex GO:0006357regulation of transcription by RNA polymerase II GO:0001104transcription coregulator activity GO:0001104transcription coregulator activity GO:0006357regulation of transcription by RNA polymerase II GO:0016592mediator complex


Orthologs (automatic annotation)
TAIR AT3G04740 : RNA polymerase II transcription mediators
RAP-DB (Rice) LOC_Os09g10960.1 : SWP, putative, expressed
MaizeGDB (Corn) Zm00025a013650
Brachypodium KQJ89684 , KQJ89683
Barley HORVU2Hr1G050500.10 , HORVU2Hr1G050500.11 , HORVU5Hr1G053430.10 , HORVU5Hr1G053430.11 , HORVU5Hr1G053430.6 , HORVU5Hr1G053430.7 , HORVU5Hr1G053430.4 , HORVU5Hr1G053430.5 , HORVU5Hr1G053430.2 , HORVU5Hr1G053430.3 , HORVU5Hr1G053430.1 , HORVU5Hr1G053430.8 , HORVU5Hr1G053430.9 , HORVU2Hr1G050500.8 , HORVU2Hr1G050500.9 , HORVU2Hr1G050500.2 , HORVU2Hr1G050500.3 , HORVU2Hr1G050500.4 , HORVU2Hr1G050500.5 , HORVU2Hr1G050500.6 , HORVU2Hr1G050500.7
Wheat TraesCS2D02G234700 , TraesCS2A02G239000 , TraesCS5A02G175600 , TraesCS5A02G175600 , TraesCS2A02G239000 , TraesCS2B02G260900 , TraesCS2B02G260900 , TraesCS2B02G260900 , TraesCS5D02G179600 , TraesCS5D02G179600 , TraesCS5B02G172500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
2 Sobic.005G207500 AAA-type ATPase family protein, putative, expressed -
3 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
4 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
5 Sobic.009G119000 tetratricopeptide repeat containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
6 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
7 Sobic.002G264200 RNA recognition motif containing protein, expressed -
8 Sobic.010G069100 expressed protein -
9 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
10 Sobic.003G059750 - K11797: PHIP, PH-interacting protein
11 Sobic.007G000100 PWWP domain containing protein, expressed -
12 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
13 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
14 Sobic.008G153000 MATH domain containing protein, expressed -
15 Sobic.010G201500 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
16 Sobic.001G241200 protein kinase domain containing protein, expressed -
17 Sobic.007G146900 ARID/BRIGHT DNA-binding domain containing protein, expressed -
18 Sobic.003G293200 plus-3 domain containing protein, expressed -
19 Sobic.007G065400 expressed protein K14400: pre-mRNA cleavage complex 2 protein Pcf11
20 Sobic.005G008800 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR


Gene co-expression network
sample Sobic002G153700 Sobic002G153700 Sobic002G071500 Sobic002G071500 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic008G009700 Sobic008G009700 Sobic002G153700--Sobic008G009700 Sobic010G065300 Sobic010G065300 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic003G307000 Sobic003G307000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic001G306900 Sobic001G306900 Sobic002G153700--Sobic001G306900 Sobic005G112300 Sobic005G112300 Sobic002G071500--Sobic005G112300 Sobic003G408600 Sobic003G408600 Sobic002G071500--Sobic003G408600 Sobic002G071500--Sobic008G009700 Sobic010G116600 Sobic010G116600 Sobic002G071500--Sobic010G116600 Sobic001G026200 Sobic001G026200 Sobic002G071500--Sobic001G026200 Sobic002G071500--Sobic002G153700 Sobic002G071500--Sobic010G069100 Sobic003G119000 Sobic003G119000 Sobic002G071500--Sobic003G119000 Sobic010G201500 Sobic010G201500 Sobic002G071500--Sobic010G201500 Sobic003G059750 Sobic003G059750 Sobic005G207500--Sobic003G059750 Sobic005G207500--Sobic002G153700 Sobic007G103600 Sobic007G103600 Sobic005G207500--Sobic007G103600 Sobic005G207500--Sobic003G119000 Sobic005G207500--Sobic008G009700 Sobic002G353600 Sobic002G353600 Sobic005G207500--Sobic002G353600 Sobic005G207500--Sobic010G069100 Sobic005G207500--Sobic002G071500 Sobic005G207500--Sobic001G026200 Sobic002G309600 Sobic002G309600 Sobic008G009700--Sobic002G309600 Sobic005G008800 Sobic005G008800 Sobic008G009700--Sobic005G008800 Sobic008G009700--Sobic005G112300 Sobic007G065400 Sobic007G065400 Sobic008G009700--Sobic007G065400 Sobic008G009700--Sobic002G071500 Sobic010G002100 Sobic010G002100 Sobic008G009700--Sobic010G002100 Sobic008G009700--Sobic002G153700 Sobic008G009700--Sobic010G065300 Sobic001G241200 Sobic001G241200 Sobic008G009700--Sobic001G241200 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800 Sobic009G119000--Sobic002G153700 Sobic009G119000--Sobic003G059750 Sobic009G119000--Sobic002G071500 Sobic009G119000--Sobic010G065300 Sobic008G153000 Sobic008G153000 Sobic009G119000--Sobic008G153000 Sobic010G275500 Sobic010G275500 Sobic009G119000--Sobic010G275500 Sobic003G416700 Sobic003G416700 Sobic009G119000--Sobic003G416700 Sobic009G119000--Sobic004G048800 Sobic001G311500 Sobic001G311500 Sobic009G119000--Sobic001G311500 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic003G307000--Sobic002G153700 Sobic003G445400 Sobic003G445400 Sobic003G307000--Sobic003G445400 Sobic009G000500 Sobic009G000500 Sobic003G307000--Sobic009G000500 Sobic001G511500 Sobic001G511500 Sobic003G307000--Sobic001G511500 Sobic003G307000--Sobic001G306900 Sobic004G031700 Sobic004G031700 Sobic003G307000--Sobic004G031700 Sobic003G394300 Sobic003G394300 Sobic003G307000--Sobic003G394300 Sobic003G307000--Sobic010G065300 Sobic002G264200--Sobic010G069100 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic002G264200--Sobic008G153000 Sobic010G236400 Sobic010G236400 Sobic002G264200--Sobic010G236400 Sobic002G264200--Sobic002G071500 Sobic002G264200--Sobic007G065400 Sobic002G264200--Sobic002G153700 Sobic006G118700 Sobic006G118700 Sobic002G264200--Sobic006G118700 Sobic010G069100--Sobic002G071500 Sobic010G069100--Sobic002G264200 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic001G306900--Sobic007G065400 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000
Octagon: transcription factors


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