Gene annotation
Transcriptome id Sobic.003G307000.2,Sobic.003G307000.1
Synonym Sb03g035550
Functional annotation RNA recognition motif containing protein, expressed
UniProt C5XKX0 , A0A1W0VZP5
Pfam PF07744 PF00076
Panther DB PTHR21494 PTHR21494:SF0
NCBI CDD KOG3815; Transcription factor Doublesex
KEGG Orthology K18667; activating signal cointegrator complex subunit 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G27750 : nucleic acid binding
RAP-DB (Rice) LOC_Os01g56000.1 : RNA recognition motif containing protein, expressed
MaizeGDB (Corn) Zm00025a027435
Brachypodium PNT72917 , PNT72916 , KQK09910 , KQK09911
Barley HORVU3Hr1G074330.4 , HORVU3Hr1G074330.5 , HORVU3Hr1G074330.6 , HORVU3Hr1G074330.7 , HORVU3Hr1G074330.1 , HORVU3Hr1G074330.2 , HORVU3Hr1G074330.3 , HORVU3Hr1G074330.8
Wheat TraesCS3B02G335700 , TraesCS3B02G335700 , TraesCS3A02G300800 , TraesCS3A02G300800 , TraesCS3A02G300800 , TraesCS3D02G301000 , TraesCS3D02G301000 , TraesCS3D02G301000 , TraesCS3D02G301000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G000100 PWWP domain containing protein, expressed -
2 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
3 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
4 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
5 Sobic.001G511500 RNA recognition motif containing protein, putative, expressed K12837: splicing factor U2AF 65 kDa subunit
6 Sobic.001G306900 tetratricopeptide repeat domain containing protein, expressed K12600: SKI3, superkiller protein 3
7 Sobic.004G031700 expressed protein -
8 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
9 Sobic.010G065300 expressed protein K11643: CHD4, chromodomain-helicase-DNA-binding protein 4
10 Sobic.008G009700 WD domain and HEAT domain containing protein, putative, expressed K07204: regulatory associated protein of mTOR
11 Sobic.004G223600 transcription factor-related, putative, expressed K15199: general transcription factor 3C polypeptide 1
12 Sobic.002G158700 TATA binding protein-associated factor, putative, expressed K03131: transcription initiation factor TFIID subunit 6
13 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
14 Sobic.007G096000 expressed protein -
15 Sobic.003G119000 XRN 5\'-3\' exonuclease N-terminus domain containing protein, expressed K12619: XRN2, 5'-3' exoribonuclease 2
16 Sobic.006G128900 cyclin-dependent kinase G-2, putative, expressed K08818: cell division cycle 2-like
17 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
18 Sobic.001G303675 - -
19 Sobic.009G086900 expressed protein -
20 Sobic.004G158200 zinc finger, C3HC4 type domain containing protein, expressed -


Gene co-expression network
sample Sobic003G307000 Sobic003G307000 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic002G153700 Sobic002G153700 Sobic003G307000--Sobic002G153700 Sobic003G445400 Sobic003G445400 Sobic003G307000--Sobic003G445400 Sobic009G000500 Sobic009G000500 Sobic003G307000--Sobic009G000500 Sobic001G511500 Sobic001G511500 Sobic003G307000--Sobic001G511500 Sobic001G306900 Sobic001G306900 Sobic003G307000--Sobic001G306900 Sobic004G031700 Sobic004G031700 Sobic003G307000--Sobic004G031700 Sobic003G394300 Sobic003G394300 Sobic003G307000--Sobic003G394300 Sobic010G065300 Sobic010G065300 Sobic003G307000--Sobic010G065300 Sobic007G000100--Sobic001G511500 Sobic007G000100--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic007G000100--Sobic008G173900 Sobic007G000100--Sobic003G445400 Sobic003G119000 Sobic003G119000 Sobic007G000100--Sobic003G119000 Sobic007G000100--Sobic002G153700 Sobic007G000100--Sobic009G000500 Sobic003G241800 Sobic003G241800 Sobic007G000100--Sobic003G241800 Sobic007G000100--Sobic004G031700 Sobic002G071500 Sobic002G071500 Sobic002G153700--Sobic002G071500 Sobic005G207500 Sobic005G207500 Sobic002G153700--Sobic005G207500 Sobic008G009700 Sobic008G009700 Sobic002G153700--Sobic008G009700 Sobic002G153700--Sobic010G065300 Sobic009G119000 Sobic009G119000 Sobic002G153700--Sobic009G119000 Sobic002G153700--Sobic003G307000 Sobic002G264200 Sobic002G264200 Sobic002G153700--Sobic002G264200 Sobic010G069100 Sobic010G069100 Sobic002G153700--Sobic010G069100 Sobic002G153700--Sobic001G306900 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic008G067600 Sobic008G067600 Sobic003G445400--Sobic008G067600 Sobic003G445400--Sobic003G307000 Sobic002G158700 Sobic002G158700 Sobic003G445400--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic009G000500--Sobic004G031700 Sobic009G000500--Sobic003G445400 Sobic002G320500 Sobic002G320500 Sobic009G000500--Sobic002G320500 Sobic009G000500--Sobic006G128900 Sobic006G133800 Sobic006G133800 Sobic009G000500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic009G000500--Sobic001G090400 Sobic009G000500--Sobic003G307000 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic001G511500--Sobic007G000100 Sobic006G209850 Sobic006G209850 Sobic001G511500--Sobic006G209850 Sobic001G511500--Sobic006G128900 Sobic001G511500--Sobic003G119000 Sobic001G511500--Sobic004G031700 Sobic001G511500--Sobic001G306900 Sobic001G511500--Sobic003G445400 Sobic001G511500--Sobic003G307000 Sobic006G032400 Sobic006G032400 Sobic001G511500--Sobic006G032400 Sobic004G138000 Sobic004G138000 Sobic001G306900--Sobic004G138000 Sobic001G306900--Sobic010G065300 Sobic001G303675 Sobic001G303675 Sobic001G306900--Sobic001G303675 Sobic007G065400 Sobic007G065400 Sobic001G306900--Sobic007G065400 Sobic001G306900--Sobic001G511500 Sobic004G145500 Sobic004G145500 Sobic001G306900--Sobic004G145500 Sobic001G306900--Sobic002G153700 Sobic006G013500 Sobic006G013500 Sobic001G306900--Sobic006G013500 Sobic001G094000 Sobic001G094000 Sobic001G306900--Sobic001G094000 Sobic004G031700--Sobic009G000500 Sobic004G031700--Sobic003G445400 Sobic001G544200 Sobic001G544200 Sobic004G031700--Sobic001G544200 Sobic001G477800 Sobic001G477800 Sobic004G031700--Sobic001G477800 Sobic006G080300 Sobic006G080300 Sobic004G031700--Sobic006G080300 Sobic004G031700--Sobic006G128900 Sobic004G031700--Sobic001G094000 Sobic004G031700--Sobic001G511500 Sobic004G031700--Sobic002G158700 Sobic003G394300--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic003G394300--Sobic004G084300 Sobic003G394300--Sobic003G307000 Sobic004G088200 Sobic004G088200 Sobic003G394300--Sobic004G088200 Sobic005G021500 Sobic005G021500 Sobic003G394300--Sobic005G021500 Sobic003G394300--Sobic008G067600 Sobic004G158200 Sobic004G158200 Sobic003G394300--Sobic004G158200 Sobic003G394300--Sobic009G000500 Sobic007G078600 Sobic007G078600 Sobic003G394300--Sobic007G078600 Sobic010G001100 Sobic010G001100 Sobic010G065300--Sobic010G001100 Sobic010G065300--Sobic008G009700 Sobic010G065300--Sobic002G153700 Sobic010G065300--Sobic001G306900 Sobic001G134300 Sobic001G134300 Sobic010G065300--Sobic001G134300 Sobic003G293200 Sobic003G293200 Sobic010G065300--Sobic003G293200 Sobic010G065300--Sobic009G119000 Sobic004G156500 Sobic004G156500 Sobic010G065300--Sobic004G156500 Sobic004G048800 Sobic004G048800 Sobic010G065300--Sobic004G048800
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.