Gene annotation
Transcriptome id Sobic.003G394300.1,Sobic.003G394300.2
Synonym Sb03g043170
Functional annotation tetratricopeptide repeat domain containing protein, expressed
UniProt A0A1W0W111 , C5XFH9
Pfam PF13181 PF13424 PF07719
Panther DB PTHR23083 PTHR23083:SF343
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G63200 : tetratricopeptide repeat (TPR)-containing protein
RAP-DB (Rice) LOC_Os01g67920.1 : tetratricopeptide repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a026367
Brachypodium KQK11097
Barley HORVU3Hr1G088480.1 , HORVU3Hr1G088460.2 , HORVU3Hr1G088460.1 , HORVU3Hr1G088480.3 , HORVU3Hr1G088480.2
Wheat TraesCS3A02G390800 , TraesCS3A02G390800 , TraesCS3B02G422600 , TraesCS3B02G422600 , TraesCS3D02G383400 , TraesCS3D02G383400
Populus -


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cDNA sequences
Sobic.003G394300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G445400 vacuolar fusion protein MON1 homolog A, putative, expressed -
2 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
3 Sobic.003G307000 RNA recognition motif containing protein, expressed K18667: activating signal cointegrator complex subunit 2
4 Sobic.004G088200 transcription factor S-II, central domain containing protein, expressed -
5 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
6 Sobic.008G067600 protein kinase PKN/PRK1, effector, putative, expressed -
7 Sobic.004G158200 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.009G000500 pex14, putative, expressed K13343: peroxin-14
9 Sobic.007G078600 YT521-B, putative, expressed -
10 Sobic.009G065100 splicing factor, putative, expressed K12850: pre-mRNA-splicing factor 38B
11 Sobic.002G264200 RNA recognition motif containing protein, expressed -
12 Sobic.001G311500 N-acetylglucosaminyl transferase component, putative, expressed K03860: PIGQ, phosphatidylinositol N-acetylglucosaminyltransferase subunit Q
13 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
14 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
15 Sobic.001G088100 transcriptional adaptor, putative, expressed K11314: TADA2A, transcriptional adapter 2-alpha
16 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
17 Sobic.003G401100 WW domain containing protein, expressed K12865: PQBP1, polyglutamine-binding protein 1
18 Sobic.008G103200 OsPOP1 - Putative Prolyl Oligopeptidase homologue, expressed K01322: prolyl oligopeptidase
19 Sobic.002G153700 SWP, putative, expressed K15156: MED14, mediator of RNA polymerase II transcription subunit 14
20 Sobic.007G091600 proline rich protein 3, putative, expressed -


Gene co-expression network
sample Sobic003G394300 Sobic003G394300 Sobic003G445400 Sobic003G445400 Sobic003G394300--Sobic003G445400 Sobic004G084300 Sobic004G084300 Sobic003G394300--Sobic004G084300 Sobic003G307000 Sobic003G307000 Sobic003G394300--Sobic003G307000 Sobic004G088200 Sobic004G088200 Sobic003G394300--Sobic004G088200 Sobic005G021500 Sobic005G021500 Sobic003G394300--Sobic005G021500 Sobic008G067600 Sobic008G067600 Sobic003G394300--Sobic008G067600 Sobic004G158200 Sobic004G158200 Sobic003G394300--Sobic004G158200 Sobic009G000500 Sobic009G000500 Sobic003G394300--Sobic009G000500 Sobic007G078600 Sobic007G078600 Sobic003G394300--Sobic007G078600 Sobic004G031700 Sobic004G031700 Sobic003G445400--Sobic004G031700 Sobic003G445400--Sobic009G000500 Sobic003G445400--Sobic008G067600 Sobic003G445400--Sobic003G307000 Sobic002G158700 Sobic002G158700 Sobic003G445400--Sobic002G158700 Sobic006G128900 Sobic006G128900 Sobic003G445400--Sobic006G128900 Sobic007G096000 Sobic007G096000 Sobic003G445400--Sobic007G096000 Sobic001G511500 Sobic001G511500 Sobic003G445400--Sobic001G511500 Sobic008G153000 Sobic008G153000 Sobic003G445400--Sobic008G153000 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic010G236400 Sobic010G236400 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic007G000100 Sobic007G000100 Sobic003G307000--Sobic007G000100 Sobic002G153700 Sobic002G153700 Sobic003G307000--Sobic002G153700 Sobic003G307000--Sobic003G445400 Sobic003G307000--Sobic009G000500 Sobic003G307000--Sobic001G511500 Sobic001G306900 Sobic001G306900 Sobic003G307000--Sobic001G306900 Sobic003G307000--Sobic004G031700 Sobic003G307000--Sobic003G394300 Sobic010G065300 Sobic010G065300 Sobic003G307000--Sobic010G065300 Sobic004G088200--Sobic003G394300 Sobic010G167900 Sobic010G167900 Sobic004G088200--Sobic010G167900 Sobic005G207500 Sobic005G207500 Sobic004G088200--Sobic005G207500 Sobic006G096900 Sobic006G096900 Sobic004G088200--Sobic006G096900 Sobic004G088200--Sobic002G153700 Sobic007G212300 Sobic007G212300 Sobic004G088200--Sobic007G212300 Sobic001G311500 Sobic001G311500 Sobic004G088200--Sobic001G311500 Sobic004G088200--Sobic003G307000 Sobic005G008800 Sobic005G008800 Sobic004G088200--Sobic005G008800 Sobic002G320500 Sobic002G320500 Sobic005G021500--Sobic002G320500 Sobic005G021500--Sobic009G065100 Sobic005G021500--Sobic003G394300 Sobic001G533700 Sobic001G533700 Sobic005G021500--Sobic001G533700 Sobic005G021500--Sobic004G158200 Sobic004G039200 Sobic004G039200 Sobic005G021500--Sobic004G039200 Sobic005G021500--Sobic009G000500 Sobic006G133800 Sobic006G133800 Sobic005G021500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic005G021500--Sobic001G090400 Sobic008G067600--Sobic001G090400 Sobic008G067600--Sobic003G445400 Sobic008G067600--Sobic004G084300 Sobic002G157300 Sobic002G157300 Sobic008G067600--Sobic002G157300 Sobic001G315100 Sobic001G315100 Sobic008G067600--Sobic001G315100 Sobic001G512700 Sobic001G512700 Sobic008G067600--Sobic001G512700 Sobic008G067600--Sobic009G000500 Sobic004G057400 Sobic004G057400 Sobic008G067600--Sobic004G057400 Sobic008G067600--Sobic008G047800 Sobic004G158200--Sobic004G084300 Sobic004G158200--Sobic001G533700 Sobic004G158200--Sobic001G311500 Sobic004G158200--Sobic009G065100 Sobic004G158200--Sobic003G394300 Sobic007G065400 Sobic007G065400 Sobic004G158200--Sobic007G065400 Sobic004G158200--Sobic005G021500 Sobic004G158200--Sobic008G067600 Sobic004G158200--Sobic002G006900 Sobic009G000500--Sobic004G031700 Sobic009G000500--Sobic003G445400 Sobic009G000500--Sobic002G320500 Sobic009G000500--Sobic006G128900 Sobic009G000500--Sobic006G133800 Sobic009G000500--Sobic001G090400 Sobic009G000500--Sobic003G307000 Sobic008G173900 Sobic008G173900 Sobic009G000500--Sobic008G173900 Sobic001G206100 Sobic001G206100 Sobic009G000500--Sobic001G206100 Sobic007G078600--Sobic008G047800 Sobic007G078600--Sobic003G394300 Sobic003G084700 Sobic003G084700 Sobic007G078600--Sobic003G084700 Sobic006G118700 Sobic006G118700 Sobic007G078600--Sobic006G118700 Sobic006G200600 Sobic006G200600 Sobic007G078600--Sobic006G200600 Sobic009G179700 Sobic009G179700 Sobic007G078600--Sobic009G179700 Sobic007G078500 Sobic007G078500 Sobic007G078600--Sobic007G078500 Sobic002G134200 Sobic002G134200 Sobic007G078600--Sobic002G134200 Sobic002G133400 Sobic002G133400 Sobic007G078600--Sobic002G133400
Octagon: transcription factors


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