Gene annotation
Transcriptome id Sobic.007G091600.1
Synonym Sb07g008520
Functional annotation proline rich protein 3, putative, expressed
UniProt C5YJK9
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF393
NCBI CDD KOG1457; RNA binding protein (contains RRM repeats)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G21215 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os08g15080.1 : proline rich protein 3, putative, expressed
MaizeGDB (Corn) Zm00025a029887
Brachypodium PNT66974
Barley HORVU7Hr1G067800.6 , HORVU7Hr1G067800.7 , HORVU7Hr1G067800.4 , HORVU7Hr1G067800.5 , HORVU7Hr1G067800.2 , HORVU7Hr1G067800.3 , HORVU7Hr1G067800.1 , HORVU7Hr1G067800.8 , HORVU7Hr1G067800.9 , HORVU7Hr1G067800.20 , HORVU7Hr1G067800.19 , HORVU7Hr1G067800.14 , HORVU7Hr1G067800.15 , HORVU7Hr1G067800.16 , HORVU7Hr1G067800.17 , HORVU7Hr1G067800.10 , HORVU7Hr1G067800.11 , HORVU7Hr1G067800.12 , HORVU7Hr1G067800.13 , HORVU7Hr1G067800.21 , HORVU7Hr1G067800.22 , HORVU7Hr1G067800.18
Wheat TraesCS7D02G290200 , TraesCS7B02G182400 , TraesCS7A02G287800
Populus -


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cDNA sequences
Sobic.007G091600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G118700 MYB family transcription factor, putative, expressed -
2 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
3 Sobic.002G264200 RNA recognition motif containing protein, expressed -
4 Sobic.004G084300 MYB family transcription factor, putative, expressed K11324: DMAP1, SWC4, DNA methyltransferase 1-associated protein 1
5 Sobic.005G021500 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
6 Sobic.010G236400 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K12847: USP39, U4/U6.U5 tri-snRNP-associated protein 2
7 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
8 Sobic.004G129300 chromatin modification-related protein EAF3, putative, expressed K11339: MORF4L1, MRG15, mortality factor 4-like protein 1
9 Sobic.003G394300 tetratricopeptide repeat domain containing protein, expressed -
10 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
11 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
12 Sobic.009G195200 ESP1, putative, expressed -
13 Sobic.004G039200 splicing factor 3B subunit 1, putative, expressed K12828: SF3B1, splicing factor 3B subunit 1
14 Sobic.005G064000 SWIRM domain containing protein, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
15 Sobic.002G034600 zinc ion binding protein, putative, expressed -
16 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
17 Sobic.007G011600 KH domain-containing protein, putative, expressed K13210: far upstream element-binding protein
18 Sobic.007G183900 ubiquitin family protein, putative, expressed -
19 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
20 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -


Gene co-expression network
sample Sobic007G091600 Sobic007G091600 Sobic006G118700 Sobic006G118700 Sobic007G091600--Sobic006G118700 Sobic007G191700 Sobic007G191700 Sobic007G091600--Sobic007G191700 Sobic002G264200 Sobic002G264200 Sobic007G091600--Sobic002G264200 Sobic004G084300 Sobic004G084300 Sobic007G091600--Sobic004G084300 Sobic005G021500 Sobic005G021500 Sobic007G091600--Sobic005G021500 Sobic010G236400 Sobic010G236400 Sobic007G091600--Sobic010G236400 Sobic009G177500 Sobic009G177500 Sobic007G091600--Sobic009G177500 Sobic004G129300 Sobic004G129300 Sobic007G091600--Sobic004G129300 Sobic003G394300 Sobic003G394300 Sobic007G091600--Sobic003G394300 Sobic007G183900 Sobic007G183900 Sobic006G118700--Sobic007G183900 Sobic006G118700--Sobic002G264200 Sobic010G112100 Sobic010G112100 Sobic006G118700--Sobic010G112100 Sobic003G360400 Sobic003G360400 Sobic006G118700--Sobic003G360400 Sobic004G355800 Sobic004G355800 Sobic006G118700--Sobic004G355800 Sobic010G069100 Sobic010G069100 Sobic006G118700--Sobic010G069100 Sobic002G366400 Sobic002G366400 Sobic006G118700--Sobic002G366400 Sobic006G118700--Sobic010G236400 Sobic006G118700--Sobic007G091600 Sobic010G237900 Sobic010G237900 Sobic007G191700--Sobic010G237900 Sobic007G191700--Sobic007G091600 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic002G264200--Sobic010G069100 Sobic003G416700 Sobic003G416700 Sobic002G264200--Sobic003G416700 Sobic001G461400 Sobic001G461400 Sobic002G264200--Sobic001G461400 Sobic008G153000 Sobic008G153000 Sobic002G264200--Sobic008G153000 Sobic002G264200--Sobic010G236400 Sobic002G071500 Sobic002G071500 Sobic002G264200--Sobic002G071500 Sobic007G065400 Sobic007G065400 Sobic002G264200--Sobic007G065400 Sobic002G153700 Sobic002G153700 Sobic002G264200--Sobic002G153700 Sobic002G264200--Sobic006G118700 Sobic008G047800 Sobic008G047800 Sobic004G084300--Sobic008G047800 Sobic001G222500 Sobic001G222500 Sobic004G084300--Sobic001G222500 Sobic003G241200 Sobic003G241200 Sobic004G084300--Sobic003G241200 Sobic002G006900 Sobic002G006900 Sobic004G084300--Sobic002G006900 Sobic004G084300--Sobic010G236400 Sobic009G040600 Sobic009G040600 Sobic004G084300--Sobic009G040600 Sobic008G067600 Sobic008G067600 Sobic004G084300--Sobic008G067600 Sobic009G065100 Sobic009G065100 Sobic004G084300--Sobic009G065100 Sobic007G132400 Sobic007G132400 Sobic004G084300--Sobic007G132400 Sobic002G320500 Sobic002G320500 Sobic005G021500--Sobic002G320500 Sobic005G021500--Sobic009G065100 Sobic005G021500--Sobic003G394300 Sobic001G533700 Sobic001G533700 Sobic005G021500--Sobic001G533700 Sobic004G158200 Sobic004G158200 Sobic005G021500--Sobic004G158200 Sobic004G039200 Sobic004G039200 Sobic005G021500--Sobic004G039200 Sobic009G000500 Sobic009G000500 Sobic005G021500--Sobic009G000500 Sobic006G133800 Sobic006G133800 Sobic005G021500--Sobic006G133800 Sobic001G090400 Sobic001G090400 Sobic005G021500--Sobic001G090400 Sobic010G236400--Sobic004G084300 Sobic010G236400--Sobic002G264200 Sobic010G236400--Sobic010G069100 Sobic002G126500 Sobic002G126500 Sobic010G236400--Sobic002G126500 Sobic004G274200 Sobic004G274200 Sobic010G236400--Sobic004G274200 Sobic010G116600 Sobic010G116600 Sobic010G236400--Sobic010G116600 Sobic010G236400--Sobic007G183900 Sobic010G236400--Sobic002G071500 Sobic003G401100 Sobic003G401100 Sobic010G236400--Sobic003G401100 Sobic001G433800 Sobic001G433800 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic004G140600 Sobic004G140600 Sobic009G177500--Sobic004G140600 Sobic009G177500--Sobic008G047800 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic004G129300--Sobic010G237900 Sobic004G129300--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic004G129300--Sobic001G002600 Sobic004G129300--Sobic007G091600 Sobic004G129300--Sobic007G090430 Sobic008G173100 Sobic008G173100 Sobic004G129300--Sobic008G173100 Sobic001G087600 Sobic001G087600 Sobic004G129300--Sobic001G087600 Sobic007G183300 Sobic007G183300 Sobic004G129300--Sobic007G183300 Sobic001G384300 Sobic001G384300 Sobic004G129300--Sobic001G384300 Sobic003G445400 Sobic003G445400 Sobic003G394300--Sobic003G445400 Sobic003G394300--Sobic004G084300 Sobic003G307000 Sobic003G307000 Sobic003G394300--Sobic003G307000 Sobic004G088200 Sobic004G088200 Sobic003G394300--Sobic004G088200 Sobic003G394300--Sobic005G021500 Sobic003G394300--Sobic008G067600 Sobic003G394300--Sobic004G158200 Sobic003G394300--Sobic009G000500 Sobic007G078600 Sobic007G078600 Sobic003G394300--Sobic007G078600
Octagon: transcription factors


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