Gene annotation
Transcriptome id Sobic.004G129300.5,Sobic.004G129300.4,Sobic.004G129300.3
Synonym Sb04g011200
Functional annotation chromatin modification-related protein EAF3, putative, expressed
UniProt A0A1Z5RM60 , A0A1Z5RM40 , A0A1Z5RMN0
Pfam PF11717 PF05712
Panther DB PTHR10880 PTHR10880:SF15
NCBI CDD KOG3001; Dosage compensation regulatory complex/histone acetyltransferase complex, subunit MSL-3/MRG15/EAF3, and related CHROMO domain-containing proteins
KEGG Orthology K11339; MORF4L1, MRG15, mortality factor 4-like protein 1
Gene Ontology GO:0016568; chromatin organization GO:0006355regulation of transcription, DNA-templated GO:0005634nucleus


Orthologs (automatic annotation)
TAIR AT4G37280 : MRG family protein
RAP-DB (Rice) LOC_Os04g01130.1,LOC_Os11g34300.2 : chromatin modification-related protein EAF3, putative, expressed
MaizeGDB (Corn) Zm00025a019733
Brachypodium KQJ81715 , KQJ81714
Barley HORVU2Hr1G006700.20 , HORVU2Hr1G006700.21 , HORVU2Hr1G006700.22 , HORVU2Hr1G006700.23 , HORVU2Hr1G006700.24 , HORVU2Hr1G006700.1 , HORVU2Hr1G006700.3 , HORVU2Hr1G006700.2 , HORVU2Hr1G006700.5 , HORVU2Hr1G006700.4 , HORVU2Hr1G006700.7 , HORVU2Hr1G006700.6 , HORVU2Hr1G006700.9 , HORVU2Hr1G006700.8 , HORVU2Hr1G006700.15 , HORVU2Hr1G006700.14 , HORVU2Hr1G006700.17 , HORVU2Hr1G006700.16 , HORVU2Hr1G006700.11 , HORVU2Hr1G006700.10 , HORVU2Hr1G006700.13 , HORVU2Hr1G006700.12 , HORVU2Hr1G006700.19 , HORVU2Hr1G006700.18
Wheat -
Populus -


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cDNA sequences
Sobic.004G129300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G237900 RNA recognition motif containing protein, putative, expressed -
2 Sobic.007G191700 expressed protein K08507: unconventional SNARE in the endoplasmic reticulum protein 1
3 Sobic.001G002600 expressed protein -
4 Sobic.007G091600 proline rich protein 3, putative, expressed -
5 Sobic.007G090430 - -
6 Sobic.008G173100 actin, putative, expressed K11662: ACTR6, actin-related protein 6
7 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
8 Sobic.007G183300 expressed protein -
9 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
10 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
11 Sobic.007G102700 - -
12 Sobic.004G156800 RNA pseudouridine synthase, putative, expressed -
13 Sobic.004G156500 expressed protein -
14 Sobic.010G145800 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
15 Sobic.002G357100 SUMO-activating enzyme subunit 2, putative, expressed K10685: UBLE1B, SAE2, ubiquitin-like 1-activating enzyme E1 B
16 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
17 Sobic.002G063900 zinc ion binding protein, putative, expressed -
18 Sobic.006G096900 expressed protein -
19 Sobic.002G145800 flowering time control protein FCA, putative, expressed -
20 Sobic.008G100100 MYB family transcription factor, putative, expressed K12860: CDC5L, CDC5, pre-mRNA-splicing factor CDC5/CEF1


Gene co-expression network
sample Sobic004G129300 Sobic004G129300 Sobic010G237900 Sobic010G237900 Sobic004G129300--Sobic010G237900 Sobic007G191700 Sobic007G191700 Sobic004G129300--Sobic007G191700 Sobic001G002600 Sobic001G002600 Sobic004G129300--Sobic001G002600 Sobic007G091600 Sobic007G091600 Sobic004G129300--Sobic007G091600 Sobic007G090430 Sobic007G090430 Sobic004G129300--Sobic007G090430 Sobic008G173100 Sobic008G173100 Sobic004G129300--Sobic008G173100 Sobic001G087600 Sobic001G087600 Sobic004G129300--Sobic001G087600 Sobic007G183300 Sobic007G183300 Sobic004G129300--Sobic007G183300 Sobic001G384300 Sobic001G384300 Sobic004G129300--Sobic001G384300 Sobic010G237900--Sobic004G129300 Sobic010G237900--Sobic007G191700 Sobic010G237900--Sobic001G002600 Sobic007G084100 Sobic007G084100 Sobic010G237900--Sobic007G084100 Sobic002G425500 Sobic002G425500 Sobic010G237900--Sobic002G425500 Sobic006G014100 Sobic006G014100 Sobic010G237900--Sobic006G014100 Sobic003G121300 Sobic003G121300 Sobic010G237900--Sobic003G121300 Sobic004G156800 Sobic004G156800 Sobic010G237900--Sobic004G156800 Sobic010G145800 Sobic010G145800 Sobic010G237900--Sobic010G145800 Sobic007G191700--Sobic010G237900 Sobic007G191700--Sobic007G091600 Sobic007G191700--Sobic004G129300 Sobic001G395100 Sobic001G395100 Sobic007G191700--Sobic001G395100 Sobic005G079800 Sobic005G079800 Sobic007G191700--Sobic005G079800 Sobic010G279700 Sobic010G279700 Sobic007G191700--Sobic010G279700 Sobic006G118700 Sobic006G118700 Sobic007G191700--Sobic006G118700 Sobic007G041300 Sobic007G041300 Sobic007G191700--Sobic007G041300 Sobic001G473600 Sobic001G473600 Sobic007G191700--Sobic001G473600 Sobic001G002600--Sobic010G237900 Sobic001G002600--Sobic004G129300 Sobic001G002600--Sobic010G145800 Sobic004G155600 Sobic004G155600 Sobic001G002600--Sobic004G155600 Sobic001G002600--Sobic006G118700 Sobic001G002600--Sobic007G191700 Sobic006G096900 Sobic006G096900 Sobic001G002600--Sobic006G096900 Sobic001G002600--Sobic006G014100 Sobic003G133900 Sobic003G133900 Sobic001G002600--Sobic003G133900 Sobic007G091600--Sobic006G118700 Sobic007G091600--Sobic007G191700 Sobic002G264200 Sobic002G264200 Sobic007G091600--Sobic002G264200 Sobic004G084300 Sobic004G084300 Sobic007G091600--Sobic004G084300 Sobic005G021500 Sobic005G021500 Sobic007G091600--Sobic005G021500 Sobic010G236400 Sobic010G236400 Sobic007G091600--Sobic010G236400 Sobic009G177500 Sobic009G177500 Sobic007G091600--Sobic009G177500 Sobic007G091600--Sobic004G129300 Sobic003G394300 Sobic003G394300 Sobic007G091600--Sobic003G394300 Sobic007G090430--Sobic008G173100 Sobic007G090430--Sobic009G177500 Sobic007G090430--Sobic001G384300 Sobic009G260500 Sobic009G260500 Sobic007G090430--Sobic009G260500 Sobic002G063900 Sobic002G063900 Sobic007G090430--Sobic002G063900 Sobic001G398800 Sobic001G398800 Sobic007G090430--Sobic001G398800 Sobic004G048800 Sobic004G048800 Sobic007G090430--Sobic004G048800 Sobic005G207500 Sobic005G207500 Sobic007G090430--Sobic005G207500 Sobic002G317200 Sobic002G317200 Sobic007G090430--Sobic002G317200 Sobic002G260400 Sobic002G260400 Sobic008G173100--Sobic002G260400 Sobic008G173100--Sobic007G090430 Sobic006G116100 Sobic006G116100 Sobic008G173100--Sobic006G116100 Sobic008G173100--Sobic002G063900 Sobic008G173100--Sobic002G264200 Sobic008G173100--Sobic010G236400 Sobic008G153000 Sobic008G153000 Sobic008G173100--Sobic008G153000 Sobic001G311500 Sobic001G311500 Sobic008G173100--Sobic001G311500 Sobic010G245000 Sobic010G245000 Sobic008G173100--Sobic010G245000 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic002G371700 Sobic002G371700 Sobic001G087600--Sobic002G371700 Sobic005G200800 Sobic005G200800 Sobic007G183300--Sobic005G200800 Sobic007G183300--Sobic002G145800 Sobic007G183300--Sobic003G416700 Sobic003G214600 Sobic003G214600 Sobic007G183300--Sobic003G214600 Sobic010G279900 Sobic010G279900 Sobic007G183300--Sobic010G279900 Sobic007G183300--Sobic002G154000 Sobic005G220000 Sobic005G220000 Sobic007G183300--Sobic005G220000 Sobic007G168300 Sobic007G168300 Sobic007G183300--Sobic007G168300 Sobic001G051700 Sobic001G051700 Sobic007G183300--Sobic001G051700 Sobic001G384300--Sobic007G090430 Sobic001G384300--Sobic006G096900 Sobic002G083500 Sobic002G083500 Sobic001G384300--Sobic002G083500 Sobic001G227200 Sobic001G227200 Sobic001G384300--Sobic001G227200 Sobic002G343901 Sobic002G343901 Sobic001G384300--Sobic002G343901 Sobic001G433800 Sobic001G433800 Sobic001G384300--Sobic001G433800 Sobic001G456900 Sobic001G456900 Sobic001G384300--Sobic001G456900 Sobic008G113100 Sobic008G113100 Sobic001G384300--Sobic008G113100 Sobic008G162900 Sobic008G162900 Sobic001G384300--Sobic008G162900
Octagon: transcription factors


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