Gene annotation
Transcriptome id Sobic.006G096900.1
Synonym Sb06g018160
Functional annotation expressed protein
UniProt C5Y9B4
Pfam -
Panther DB PTHR34112 PTHR34112:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G36990 : -
RAP-DB (Rice) LOC_Os04g37540.1 : expressed protein
MaizeGDB (Corn) Zm00025a056158 , Zm00025a011190
Brachypodium KQJ99970 , KQJ99971
Barley HORVU2Hr1G078680.2 , HORVU6Hr1G051440.8 , HORVU6Hr1G051440.9 , HORVU6Hr1G051440.7 , HORVU2Hr1G078680.1 , HORVU6Hr1G051440.1 , HORVU6Hr1G051440.2 , HORVU6Hr1G051440.4 , HORVU6Hr1G051440.14 , HORVU6Hr1G051440.15 , HORVU6Hr1G051440.16 , HORVU6Hr1G051440.5 , HORVU6Hr1G051440.10 , HORVU6Hr1G051440.11 , HORVU6Hr1G051440.12 , HORVU6Hr1G051440.13 , HORVU6Hr1G051440.3
Wheat TraesCS2A02G316300 , TraesCS2A02G316300 , TraesCS6A02G203800 , TraesCS6B02G223500 , TraesCS6B02G223500 , TraesCS6B02G223500 , TraesCS6B02G223500 , TraesCS6A02G203800 , TraesCS2B02G334400 , TraesCS6A02G203800 , TraesCS6D02G188700 , TraesCS6D02G188700 , TraesCS6D02G188700 , TraesCS6A02G203800 , TraesCS6D02G188700 , TraesCS2D02G314200
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G096900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
2 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
3 Sobic.006G252900 ubiquitin family protein, putative, expressed -
4 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
5 Sobic.003G095900 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K14442: DHX36, ATP-dependent RNA helicase DHX36
6 Sobic.006G056700 tRNA nucleotidyltransferase/polyA polymerase family protein, putative, expressed -
7 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
8 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
9 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
10 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
11 Sobic.010G021500 WD domain, G-beta repeat domain containing protein, expressed -
12 Sobic.004G209700 FAR1 family protein, expressed -
13 Sobic.004G185800 expressed protein -
14 Sobic.001G456900 expressed protein -
15 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease
16 Sobic.005G100700 mRNA-capping enzyme, putative, expressed -
17 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
18 Sobic.001G026200 heat shock protein DnaJ, putative, expressed K09534: DnaJ homolog subfamily C member 14
19 Sobic.003G188400 glutamate dehydrogenase protein, putative, expressed K00262: E1.4.1.4, glutamate dehydrogenase (NADP+)
20 Sobic.007G090430 - -


Gene co-expression network
sample Sobic006G096900 Sobic006G096900 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic009G177500 Sobic009G177500 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic003G360400 Sobic003G360400 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic001G433800 Sobic001G433800 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic004G140600 Sobic004G140600 Sobic008G063300--Sobic004G140600 Sobic008G063300--Sobic001G433800 Sobic008G063300--Sobic006G096900 Sobic008G063300--Sobic003G360400 Sobic008G063300--Sobic003G095900 Sobic010G123600 Sobic010G123600 Sobic008G063300--Sobic010G123600 Sobic003G188400 Sobic003G188400 Sobic008G063300--Sobic003G188400 Sobic008G063300--Sobic009G177500 Sobic010G059500 Sobic010G059500 Sobic008G063300--Sobic010G059500 Sobic009G177500--Sobic001G433800 Sobic001G227200 Sobic001G227200 Sobic009G177500--Sobic001G227200 Sobic005G112300 Sobic005G112300 Sobic009G177500--Sobic005G112300 Sobic009G177500--Sobic004G140600 Sobic008G047800 Sobic008G047800 Sobic009G177500--Sobic008G047800 Sobic010G112100 Sobic010G112100 Sobic009G177500--Sobic010G112100 Sobic007G090430 Sobic007G090430 Sobic009G177500--Sobic007G090430 Sobic001G392300 Sobic001G392300 Sobic009G177500--Sobic001G392300 Sobic002G343901 Sobic002G343901 Sobic009G177500--Sobic002G343901 Sobic006G252900--Sobic001G433800 Sobic006G041600 Sobic006G041600 Sobic006G252900--Sobic006G041600 Sobic001G363500 Sobic001G363500 Sobic006G252900--Sobic001G363500 Sobic001G441400 Sobic001G441400 Sobic006G252900--Sobic001G441400 Sobic009G256400 Sobic009G256400 Sobic006G252900--Sobic009G256400 Sobic006G252900--Sobic006G096900 Sobic006G252900--Sobic005G112300 Sobic005G027400 Sobic005G027400 Sobic006G252900--Sobic005G027400 Sobic006G252900--Sobic009G177500 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic004G242400 Sobic004G242400 Sobic003G095900--Sobic004G242400 Sobic003G095900--Sobic001G433800 Sobic002G133300 Sobic002G133300 Sobic003G095900--Sobic002G133300 Sobic001G089600 Sobic001G089600 Sobic003G095900--Sobic001G089600 Sobic006G088200 Sobic006G088200 Sobic003G095900--Sobic006G088200 Sobic003G095900--Sobic003G360400 Sobic003G095900--Sobic009G256400 Sobic004G276400 Sobic004G276400 Sobic003G095900--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic003G095900--Sobic001G289800 Sobic006G056700--Sobic006G096900 Sobic001G456300 Sobic001G456300 Sobic006G056700--Sobic001G456300 Sobic010G237900 Sobic010G237900 Sobic006G056700--Sobic010G237900 Sobic001G275300 Sobic001G275300 Sobic006G056700--Sobic001G275300 Sobic006G056700--Sobic008G063300 Sobic002G170200 Sobic002G170200 Sobic006G056700--Sobic002G170200 Sobic004G131800 Sobic004G131800 Sobic006G056700--Sobic004G131800 Sobic007G159900 Sobic007G159900 Sobic006G056700--Sobic007G159900 Sobic006G056700--Sobic003G360400 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic001G433800--Sobic004G242400 Sobic001G433800--Sobic002G133300 Sobic001G433800--Sobic001G363500 Sobic001G433800--Sobic006G252900 Sobic001G433800--Sobic006G041600 Sobic001G384300--Sobic007G090430 Sobic001G384300--Sobic006G096900 Sobic002G083500 Sobic002G083500 Sobic001G384300--Sobic002G083500 Sobic001G384300--Sobic001G227200 Sobic001G384300--Sobic002G343901 Sobic001G384300--Sobic001G433800 Sobic001G456900 Sobic001G456900 Sobic001G384300--Sobic001G456900 Sobic008G113100 Sobic008G113100 Sobic001G384300--Sobic008G113100 Sobic008G162900 Sobic008G162900 Sobic001G384300--Sobic008G162900 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.