Gene annotation
Transcriptome id Sobic.010G126000.2,Sobic.010G126000.1,Sobic.010G126000.3
Synonym Sb10g011100
Functional annotation WD-40 repeat family protein, putative, expressed
UniProt A0A1W0VSQ5 , A0A194YIS1 , C5Z953
Pfam PF10313 PF00400
Panther DB PTHR22847 PTHR22847:SF489
NCBI CDD KOG4532; WD40-like repeat containing protein
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G56190 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os02g48964.1 : WD-40 repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a050559
Brachypodium KQK18509 , KQK18508
Barley HORVU6Hr1G071710.18 , HORVU6Hr1G071710.19 , HORVU6Hr1G071710.16 , HORVU6Hr1G071710.17 , HORVU6Hr1G071710.14 , HORVU6Hr1G071710.15 , HORVU6Hr1G071710.12 , HORVU6Hr1G071710.13 , HORVU6Hr1G071710.10 , HORVU6Hr1G071710.11 , HORVU7Hr1G045450.7 , HORVU6Hr1G071710.20 , HORVU6Hr1G071710.5 , HORVU6Hr1G071710.6 , HORVU7Hr1G045450.1 , HORVU7Hr1G045450.5 , HORVU7Hr1G045450.4 , HORVU7Hr1G045450.6 , HORVU7Hr1G045450.3 , HORVU7Hr1G045450.2 , HORVU6Hr1G071710.8 , HORVU6Hr1G071710.7 , HORVU6Hr1G071710.1 , HORVU6Hr1G071710.2
Wheat TraesCS6B02G313300 , TraesCS6B02G313300 , TraesCS7B02G127900 , TraesCS6D02G265000 , TraesCS7A02G219400 , TraesCS7D02G222700
Populus -


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cDNA sequences
Sobic.010G126000


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G168100 BZIP protein, putative, expressed -
2 Sobic.008G044100 expressed protein -
3 Sobic.002G127550 - -
4 Sobic.005G167700 protein phosphatase 2C, putative, expressed -
5 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
6 Sobic.006G096900 expressed protein -
7 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
8 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
9 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
10 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
11 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
12 Sobic.001G002000 protein kinase domain containing protein, expressed -
13 Sobic.010G010700 PHD-finger family protein, expressed -
14 Sobic.009G129100 preprotein translocase subunit secY, putative, expressed -
15 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
16 Sobic.001G384300 myb-like DNA-binding domain containing protein, expressed -
17 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
18 Sobic.007G090430 - -
19 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
20 Sobic.004G185800 expressed protein -


Gene co-expression network
sample Sobic010G126000 Sobic010G126000 Sobic003G168100 Sobic003G168100 Sobic010G126000--Sobic003G168100 Sobic008G044100 Sobic008G044100 Sobic010G126000--Sobic008G044100 Sobic002G127550 Sobic002G127550 Sobic010G126000--Sobic002G127550 Sobic005G167700 Sobic005G167700 Sobic010G126000--Sobic005G167700 Sobic001G227200 Sobic001G227200 Sobic010G126000--Sobic001G227200 Sobic006G096900 Sobic006G096900 Sobic010G126000--Sobic006G096900 Sobic003G398700 Sobic003G398700 Sobic010G126000--Sobic003G398700 Sobic001G219600 Sobic001G219600 Sobic010G126000--Sobic001G219600 Sobic007G136800 Sobic007G136800 Sobic010G126000--Sobic007G136800 Sobic003G168100--Sobic010G126000 Sobic003G168100--Sobic005G167700 Sobic009G129100 Sobic009G129100 Sobic003G168100--Sobic009G129100 Sobic003G168100--Sobic008G044100 Sobic001G433800 Sobic001G433800 Sobic003G168100--Sobic001G433800 Sobic003G168100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic003G168100--Sobic004G244900 Sobic004G134200 Sobic004G134200 Sobic003G168100--Sobic004G134200 Sobic004G185800 Sobic004G185800 Sobic003G168100--Sobic004G185800 Sobic010G010700 Sobic010G010700 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic008G044100--Sobic001G374100 Sobic003G155100 Sobic003G155100 Sobic008G044100--Sobic003G155100 Sobic010G206900 Sobic010G206900 Sobic008G044100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic008G044100--Sobic001G230000 Sobic008G001200 Sobic008G001200 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic003G138500 Sobic003G138500 Sobic002G127550--Sobic003G138500 Sobic002G127550--Sobic010G126000 Sobic002G127550--Sobic008G044100 Sobic004G034800 Sobic004G034800 Sobic002G127550--Sobic004G034800 Sobic001G194200 Sobic001G194200 Sobic002G127550--Sobic001G194200 Sobic002G127550--Sobic008G001200 Sobic002G127550--Sobic010G010700 Sobic004G291900 Sobic004G291900 Sobic002G127550--Sobic004G291900 Sobic004G209600 Sobic004G209600 Sobic002G127550--Sobic004G209600 Sobic010G123600 Sobic010G123600 Sobic005G167700--Sobic010G123600 Sobic003G441900 Sobic003G441900 Sobic005G167700--Sobic003G441900 Sobic005G167700--Sobic001G433800 Sobic005G167700--Sobic003G168100 Sobic001G151100 Sobic001G151100 Sobic005G167700--Sobic001G151100 Sobic004G158400 Sobic004G158400 Sobic005G167700--Sobic004G158400 Sobic003G188400 Sobic003G188400 Sobic005G167700--Sobic003G188400 Sobic005G167700--Sobic010G126000 Sobic003G360400 Sobic003G360400 Sobic005G167700--Sobic003G360400 Sobic004G140600 Sobic004G140600 Sobic001G227200--Sobic004G140600 Sobic009G177500 Sobic009G177500 Sobic001G227200--Sobic009G177500 Sobic005G106500 Sobic005G106500 Sobic001G227200--Sobic005G106500 Sobic010G139000 Sobic010G139000 Sobic001G227200--Sobic010G139000 Sobic002G343901 Sobic002G343901 Sobic001G227200--Sobic002G343901 Sobic004G258700 Sobic004G258700 Sobic001G227200--Sobic004G258700 Sobic001G311500 Sobic001G311500 Sobic001G227200--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic001G227200--Sobic001G036050 Sobic001G456900 Sobic001G456900 Sobic001G227200--Sobic001G456900 Sobic008G063300 Sobic008G063300 Sobic006G096900--Sobic008G063300 Sobic006G096900--Sobic009G177500 Sobic006G252900 Sobic006G252900 Sobic006G096900--Sobic006G252900 Sobic006G096900--Sobic003G360400 Sobic003G095900 Sobic003G095900 Sobic006G096900--Sobic003G095900 Sobic006G056700 Sobic006G056700 Sobic006G096900--Sobic006G056700 Sobic006G096900--Sobic001G433800 Sobic001G384300 Sobic001G384300 Sobic006G096900--Sobic001G384300 Sobic009G044800 Sobic009G044800 Sobic006G096900--Sobic009G044800 Sobic002G257750 Sobic002G257750 Sobic003G398700--Sobic002G257750 Sobic003G398700--Sobic001G456900 Sobic003G398700--Sobic008G044100 Sobic010G021500 Sobic010G021500 Sobic003G398700--Sobic010G021500 Sobic003G398700--Sobic007G136800 Sobic003G398700--Sobic004G185800 Sobic003G398700--Sobic003G168100 Sobic008G113100 Sobic008G113100 Sobic003G398700--Sobic008G113100 Sobic003G398700--Sobic010G126000 Sobic009G260500 Sobic009G260500 Sobic001G219600--Sobic009G260500 Sobic002G309600 Sobic002G309600 Sobic001G219600--Sobic002G309600 Sobic002G317200 Sobic002G317200 Sobic001G219600--Sobic002G317200 Sobic009G047200 Sobic009G047200 Sobic001G219600--Sobic009G047200 Sobic003G141500 Sobic003G141500 Sobic001G219600--Sobic003G141500 Sobic001G219600--Sobic010G139000 Sobic001G071400 Sobic001G071400 Sobic001G219600--Sobic001G071400 Sobic002G397500 Sobic002G397500 Sobic001G219600--Sobic002G397500 Sobic001G020000 Sobic001G020000 Sobic001G219600--Sobic001G020000 Sobic007G136800--Sobic003G398700 Sobic007G136800--Sobic010G126000 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic006G031800 Sobic006G031800 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic001G043800 Sobic001G043800 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900
Octagon: transcription factors


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