Gene annotation
Transcriptome id Sobic.007G136800.1
Synonym Sb07g021250, ATPTB1, PTB, PTB1
Functional annotation polypyrimidine tract-binding protein, putative, expressed
UniProt C5YL85
Pfam PF13893 PF00076
Panther DB PTHR24012 PTHR24012:SF386
NCBI CDD KOG1190; Polypyrimidine tract-binding protein
KEGG Orthology K14948; PTBP2, polypyrimidine tract-binding protein 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G01150 : polypyrimidine tract-binding protein 1
RAP-DB (Rice) LOC_Os08g33830.1 : polypyrimidine tract-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a002660 , Zm00025a005933 , Zm00025a052063 , Zm00025a031142
Brachypodium KQJ98409 , KQK21505
Barley HORVU7Hr1G063630.1 , HORVU7Hr1G063630.3 , HORVU7Hr1G063630.2 , HORVU7Hr1G063630.5 , HORVU7Hr1G063630.4 , HORVU4Hr1G039070.11 , HORVU4Hr1G039070.9 , HORVU4Hr1G039070.8 , HORVU4Hr1G039070.3 , HORVU4Hr1G039070.2 , HORVU4Hr1G039070.1 , HORVU4Hr1G039070.7 , HORVU4Hr1G039070.6 , HORVU4Hr1G039070.5 , HORVU4Hr1G039070.4
Wheat TraesCS4B02G153900 , TraesCS4B02G153900 , TraesCS4D02G163000 , TraesCS7A02G285500 , TraesCS7A02G285500 , TraesCS7A02G285500 , TraesCS7A02G285500 , TraesCS7D02G282900 , TraesCS7D02G282900 , TraesCS7D02G282900 , TraesCS7D02G282900 , TraesCS7B02G200000 , TraesCS7B02G200000 , TraesCS7B02G200000 , TraesCS7B02G200000 , TraesCS7B02G200000 , TraesCS4A02G147800
Populus PNT40849 , PNT40851 , PNT40850 , PNT40853 , PNS95912 , PNS95911 , PNS95910


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cDNA sequences
Sobic.007G136800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
2 Sobic.010G126000 WD-40 repeat family protein, putative, expressed -
3 Sobic.003G168100 BZIP protein, putative, expressed -
4 Sobic.001G375700 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, expressed K12890: SFRS1, ASF, splicing factor, arginine/serine-rich 1
5 Sobic.006G031800 - -
6 Sobic.005G100600 bZIP transcription factor domain containing protein, expressed -
7 Sobic.001G043800 stage II sporulation protein E, putative, expressed -
8 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
9 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
10 Sobic.001G456900 expressed protein -
11 Sobic.010G176550 - -
12 Sobic.001G227200 haloacid dehalogenase-like hydrolase domain-containing protein 1A, putative, expressed K00861: RFK, riboflavin kinase
13 Sobic.010G243900 OsFBO9 - F-box and other domain containing protein, expressed K12115: clock-associated PAS protein ZTL
14 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
15 Sobic.004G174400 ZOS2-09 - C2H2 zinc finger protein, expressed -
16 Sobic.001G332500 WRKY81, expressed -
17 Sobic.005G027400 RNA recognition motif containing protein, expressed K13161: heterogeneous nuclear ribonucleoprotein R
18 Sobic.002G257750 - -
19 Sobic.008G044100 expressed protein -
20 Sobic.001G036050 - -


Gene co-expression network
sample Sobic007G136800 Sobic007G136800 Sobic003G398700 Sobic003G398700 Sobic007G136800--Sobic003G398700 Sobic010G126000 Sobic010G126000 Sobic007G136800--Sobic010G126000 Sobic003G168100 Sobic003G168100 Sobic007G136800--Sobic003G168100 Sobic001G375700 Sobic001G375700 Sobic007G136800--Sobic001G375700 Sobic006G031800 Sobic006G031800 Sobic007G136800--Sobic006G031800 Sobic005G100600 Sobic005G100600 Sobic007G136800--Sobic005G100600 Sobic001G043800 Sobic001G043800 Sobic007G136800--Sobic001G043800 Sobic003G011300 Sobic003G011300 Sobic007G136800--Sobic003G011300 Sobic010G032900 Sobic010G032900 Sobic007G136800--Sobic010G032900 Sobic002G257750 Sobic002G257750 Sobic003G398700--Sobic002G257750 Sobic001G456900 Sobic001G456900 Sobic003G398700--Sobic001G456900 Sobic008G044100 Sobic008G044100 Sobic003G398700--Sobic008G044100 Sobic010G021500 Sobic010G021500 Sobic003G398700--Sobic010G021500 Sobic003G398700--Sobic007G136800 Sobic004G185800 Sobic004G185800 Sobic003G398700--Sobic004G185800 Sobic003G398700--Sobic003G168100 Sobic008G113100 Sobic008G113100 Sobic003G398700--Sobic008G113100 Sobic003G398700--Sobic010G126000 Sobic010G126000--Sobic003G168100 Sobic010G126000--Sobic008G044100 Sobic002G127550 Sobic002G127550 Sobic010G126000--Sobic002G127550 Sobic005G167700 Sobic005G167700 Sobic010G126000--Sobic005G167700 Sobic001G227200 Sobic001G227200 Sobic010G126000--Sobic001G227200 Sobic006G096900 Sobic006G096900 Sobic010G126000--Sobic006G096900 Sobic010G126000--Sobic003G398700 Sobic001G219600 Sobic001G219600 Sobic010G126000--Sobic001G219600 Sobic010G126000--Sobic007G136800 Sobic003G168100--Sobic010G126000 Sobic003G168100--Sobic005G167700 Sobic009G129100 Sobic009G129100 Sobic003G168100--Sobic009G129100 Sobic003G168100--Sobic008G044100 Sobic001G433800 Sobic001G433800 Sobic003G168100--Sobic001G433800 Sobic003G168100--Sobic003G398700 Sobic004G244900 Sobic004G244900 Sobic003G168100--Sobic004G244900 Sobic004G134200 Sobic004G134200 Sobic003G168100--Sobic004G134200 Sobic003G168100--Sobic004G185800 Sobic004G084300 Sobic004G084300 Sobic001G375700--Sobic004G084300 Sobic002G126500 Sobic002G126500 Sobic001G375700--Sobic002G126500 Sobic001G281600 Sobic001G281600 Sobic001G375700--Sobic001G281600 Sobic003G197800 Sobic003G197800 Sobic001G375700--Sobic003G197800 Sobic001G107500 Sobic001G107500 Sobic001G375700--Sobic001G107500 Sobic001G375700--Sobic007G136800 Sobic007G054400 Sobic007G054400 Sobic001G375700--Sobic007G054400 Sobic001G375700--Sobic008G113100 Sobic001G375700--Sobic001G227200 Sobic009G215500 Sobic009G215500 Sobic006G031800--Sobic009G215500 Sobic001G465700 Sobic001G465700 Sobic006G031800--Sobic001G465700 Sobic006G031800--Sobic007G136800 Sobic006G031800--Sobic003G168100 Sobic003G217700 Sobic003G217700 Sobic006G031800--Sobic003G217700 Sobic003G110800 Sobic003G110800 Sobic006G031800--Sobic003G110800 Sobic006G128300 Sobic006G128300 Sobic006G031800--Sobic006G128300 Sobic006G038500 Sobic006G038500 Sobic006G031800--Sobic006G038500 Sobic002G218500 Sobic002G218500 Sobic006G031800--Sobic002G218500 Sobic006G092000 Sobic006G092000 Sobic005G100600--Sobic006G092000 Sobic005G100600--Sobic007G136800 Sobic001G085600 Sobic001G085600 Sobic005G100600--Sobic001G085600 Sobic005G100600--Sobic003G110800 Sobic005G100600--Sobic001G465700 Sobic005G100600--Sobic006G038500 Sobic006G173600 Sobic006G173600 Sobic005G100600--Sobic006G173600 Sobic001G261545 Sobic001G261545 Sobic005G100600--Sobic001G261545 Sobic002G091600 Sobic002G091600 Sobic005G100600--Sobic002G091600 Sobic001G043800--Sobic007G136800 Sobic006G130800 Sobic006G130800 Sobic001G043800--Sobic006G130800 Sobic004G086700 Sobic004G086700 Sobic001G043800--Sobic004G086700 Sobic001G043800--Sobic002G218500 Sobic001G102500 Sobic001G102500 Sobic001G043800--Sobic001G102500 Sobic001G043800--Sobic006G031800 Sobic007G029700 Sobic007G029700 Sobic001G043800--Sobic007G029700 Sobic001G053000 Sobic001G053000 Sobic001G043800--Sobic001G053000 Sobic002G431300 Sobic002G431300 Sobic001G043800--Sobic002G431300 Sobic003G011300--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic003G011300--Sobic001G374100 Sobic007G116200 Sobic007G116200 Sobic003G011300--Sobic007G116200 Sobic003G011300--Sobic010G032900 Sobic004G042200 Sobic004G042200 Sobic003G011300--Sobic004G042200 Sobic005G059800 Sobic005G059800 Sobic003G011300--Sobic005G059800 Sobic001G002000 Sobic001G002000 Sobic003G011300--Sobic001G002000 Sobic003G011300--Sobic003G168100 Sobic003G011300--Sobic010G126000 Sobic010G032900--Sobic005G059800 Sobic010G139000 Sobic010G139000 Sobic010G032900--Sobic010G139000 Sobic003G170900 Sobic003G170900 Sobic010G032900--Sobic003G170900 Sobic001G194200 Sobic001G194200 Sobic010G032900--Sobic001G194200 Sobic010G032900--Sobic001G002000 Sobic010G032900--Sobic003G011300 Sobic004G291900 Sobic004G291900 Sobic010G032900--Sobic004G291900 Sobic002G294800 Sobic002G294800 Sobic010G032900--Sobic002G294800 Sobic002G134200 Sobic002G134200 Sobic010G032900--Sobic002G134200
Octagon: transcription factors


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