Gene annotation
Transcriptome id Sobic.010G032900.1
Synonym DXPS3, Sb10g002960
Functional annotation transketolase, putative, expressed
UniProt C5Z3V0
Pfam PF02780 PF02779 PF13292
Panther DB PTHR11624 PTHR11624:SF64
NCBI CDD -
KEGG Orthology K01662; 1-deoxy-D-xylulose-5-phosphate synthase
Gene Ontology GO:0008152; metabolic process GO:0003824catalytic activity GO:0016114terpenoid biosynthetic process GO:00086611-deoxy-D-xylulose-5-phosphate synthase activity


Orthologs (automatic annotation)
TAIR AT5G11380 : 1-deoxy-D-xylulose 5-phosphate synthase 3
RAP-DB (Rice) LOC_Os06g05100.1 : transketolase, putative, expressed
MaizeGDB (Corn) Zm00025a050061
Brachypodium -
Barley -
Wheat -
Populus PNS92424 , PNS92422 , PNS92423 , PNS92421


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
2 Sobic.010G139000 surp module family protein, putative, expressed K13123: G patch domain-containing protein 1
3 Sobic.003G170900 - -
4 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
5 Sobic.001G002000 protein kinase domain containing protein, expressed -
6 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
7 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
8 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
9 Sobic.002G134200 WD domain, G-beta repeat domain containing protein, expressed K11293: HIRA, protein HIRA/HIR1
10 Sobic.004G314000 expressed protein -
11 Sobic.001G219600 importin-beta N-terminal domain containing protein, expressed K15436: TRPO3, transportin-3
12 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
13 Sobic.010G176550 - -
14 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
15 Sobic.001G036050 - -
16 Sobic.010G206900 transcription initiation factor TFIID subunit 1, putative, expressed K03125: transcription initiation factor TFIID subunit 1
17 Sobic.010G010700 PHD-finger family protein, expressed -
18 Sobic.002G309600 DNA-binding protein, putative, expressed K14326: UPF1, regulator of nonsense transcripts 1
19 Sobic.008G044100 expressed protein -
20 Sobic.002G211800 AT-rich interaction region, putative, expressed -


Gene co-expression network
sample Sobic010G032900 Sobic010G032900 Sobic005G059800 Sobic005G059800 Sobic010G032900--Sobic005G059800 Sobic010G139000 Sobic010G139000 Sobic010G032900--Sobic010G139000 Sobic003G170900 Sobic003G170900 Sobic010G032900--Sobic003G170900 Sobic001G194200 Sobic001G194200 Sobic010G032900--Sobic001G194200 Sobic001G002000 Sobic001G002000 Sobic010G032900--Sobic001G002000 Sobic003G011300 Sobic003G011300 Sobic010G032900--Sobic003G011300 Sobic004G291900 Sobic004G291900 Sobic010G032900--Sobic004G291900 Sobic002G294800 Sobic002G294800 Sobic010G032900--Sobic002G294800 Sobic002G134200 Sobic002G134200 Sobic010G032900--Sobic002G134200 Sobic005G059800--Sobic010G032900 Sobic005G059800--Sobic002G294800 Sobic006G185100 Sobic006G185100 Sobic005G059800--Sobic006G185100 Sobic005G059800--Sobic001G194200 Sobic003G155100 Sobic003G155100 Sobic005G059800--Sobic003G155100 Sobic005G059800--Sobic003G011300 Sobic008G044100 Sobic008G044100 Sobic005G059800--Sobic008G044100 Sobic008G070800 Sobic008G070800 Sobic005G059800--Sobic008G070800 Sobic003G398700 Sobic003G398700 Sobic005G059800--Sobic003G398700 Sobic004G314000 Sobic004G314000 Sobic010G139000--Sobic004G314000 Sobic005G112300 Sobic005G112300 Sobic010G139000--Sobic005G112300 Sobic010G279450 Sobic010G279450 Sobic010G139000--Sobic010G279450 Sobic010G206900 Sobic010G206900 Sobic010G139000--Sobic010G206900 Sobic001G311500 Sobic001G311500 Sobic010G139000--Sobic001G311500 Sobic001G036050 Sobic001G036050 Sobic010G139000--Sobic001G036050 Sobic010G112100 Sobic010G112100 Sobic010G139000--Sobic010G112100 Sobic010G010700 Sobic010G010700 Sobic010G139000--Sobic010G010700 Sobic005G008800 Sobic005G008800 Sobic010G139000--Sobic005G008800 Sobic009G165700 Sobic009G165700 Sobic003G170900--Sobic009G165700 Sobic010G123600 Sobic010G123600 Sobic003G170900--Sobic010G123600 Sobic003G170900--Sobic005G112300 Sobic003G170900--Sobic010G206900 Sobic003G170900--Sobic010G139000 Sobic003G422500 Sobic003G422500 Sobic003G170900--Sobic003G422500 Sobic003G166750 Sobic003G166750 Sobic003G170900--Sobic003G166750 Sobic010G247800 Sobic010G247800 Sobic003G170900--Sobic010G247800 Sobic003G170900--Sobic001G194200 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic001G002000--Sobic001G194200 Sobic001G002000--Sobic001G289800 Sobic001G002000--Sobic004G291900 Sobic001G002000--Sobic003G422500 Sobic001G002000--Sobic010G247800 Sobic001G002000--Sobic010G010700 Sobic001G002000--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic001G002000--Sobic001G289600 Sobic002G411600 Sobic002G411600 Sobic001G002000--Sobic002G411600 Sobic004G134200 Sobic004G134200 Sobic003G011300--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic003G011300--Sobic001G374100 Sobic007G116200 Sobic007G116200 Sobic003G011300--Sobic007G116200 Sobic003G011300--Sobic010G032900 Sobic004G042200 Sobic004G042200 Sobic003G011300--Sobic004G042200 Sobic003G011300--Sobic005G059800 Sobic003G011300--Sobic001G002000 Sobic003G168100 Sobic003G168100 Sobic003G011300--Sobic003G168100 Sobic010G126000 Sobic010G126000 Sobic003G011300--Sobic010G126000 Sobic004G291900--Sobic001G194200 Sobic004G291900--Sobic001G289800 Sobic004G174200 Sobic004G174200 Sobic004G291900--Sobic004G174200 Sobic004G291900--Sobic004G276400 Sobic004G291900--Sobic005G001000 Sobic004G291900--Sobic004G034900 Sobic009G256400 Sobic009G256400 Sobic004G291900--Sobic009G256400 Sobic004G291900--Sobic001G002000 Sobic004G291900--Sobic010G010700 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic001G071400 Sobic001G071400 Sobic002G134200--Sobic001G071400 Sobic002G309600 Sobic002G309600 Sobic002G134200--Sobic002G309600 Sobic003G280800 Sobic003G280800 Sobic002G134200--Sobic003G280800 Sobic006G216800 Sobic006G216800 Sobic002G134200--Sobic006G216800 Sobic002G133400 Sobic002G133400 Sobic002G134200--Sobic002G133400 Sobic008G047800 Sobic008G047800 Sobic002G134200--Sobic008G047800 Sobic002G134200--Sobic005G008800 Sobic009G191000 Sobic009G191000 Sobic002G134200--Sobic009G191000 Sobic002G008900 Sobic002G008900 Sobic002G134200--Sobic002G008900
Octagon: transcription factors


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