Gene annotation
Transcriptome id Sobic.005G059800.1,Sobic.005G059800.2
Synonym CSTF64, Sb05g004860
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6PQE2 , A0A1Z5RHT7
Pfam PF14304 PF14327 PF14304 PF14327 PF00076
Panther DB PTHR23139 PTHR23139:SF8
NCBI CDD KOG0108; mRNA cleavage and polyadenylation factor I complex, subunit RNA15
KEGG Orthology K14407; CSTF2, cleavage stimulation factor subunit 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G71800 : cleavage stimulating factor 64
RAP-DB (Rice) LOC_Os11g07490.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a012827 , Zm00025a034009
Brachypodium KQJ89203 , KQJ89202 , KQJ89204
Barley HORVU4Hr1G019040.14 , HORVU4Hr1G019040.15 , HORVU4Hr1G019040.4 , HORVU4Hr1G019040.5 , HORVU4Hr1G019040.6 , HORVU4Hr1G019040.7 , HORVU4Hr1G019040.1 , HORVU4Hr1G019040.2 , HORVU4Hr1G019040.3 , HORVU4Hr1G019040.8 , HORVU4Hr1G019040.9 , HORVU4Hr1G019040.16 , HORVU4Hr1G019040.17 , HORVU4Hr1G019040.12 , HORVU4Hr1G019040.13 , HORVU4Hr1G019040.10 , HORVU4Hr1G019040.11
Wheat TraesCS4B02G094500 , TraesCS4D02G091300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G032900 transketolase, putative, expressed K01662: 1-deoxy-D-xylulose-5-phosphate synthase
2 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
3 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
4 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
5 Sobic.003G155100 suppressor of Mek, putative, expressed K17491: SMEK, protein phosphatase 4 regulatory subunit 3
6 Sobic.003G011300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
7 Sobic.008G044100 expressed protein -
8 Sobic.008G070800 expressed protein -
9 Sobic.003G398700 expressed protein K15210: snRNA-activating protein complex subunit 3
10 Sobic.004G244900 expressed protein -
11 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
12 Sobic.001G036050 - -
13 Sobic.007G023200 OsFBX178 - F-box domain containing protein, expressed -
14 Sobic.003G247500 expressed protein -
15 Sobic.002G211800 AT-rich interaction region, putative, expressed -
16 Sobic.010G123600 WW domain containing protein, expressed -
17 Sobic.004G291900 ESP4, putative, expressed K06100: symplekin
18 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
19 Sobic.004G134200 GTP binding protein, putative, expressed -
20 Sobic.005G142800 exportin 1, putative, expressed K15436: TRPO3, transportin-3


Gene co-expression network
sample Sobic005G059800 Sobic005G059800 Sobic010G032900 Sobic010G032900 Sobic005G059800--Sobic010G032900 Sobic002G294800 Sobic002G294800 Sobic005G059800--Sobic002G294800 Sobic006G185100 Sobic006G185100 Sobic005G059800--Sobic006G185100 Sobic001G194200 Sobic001G194200 Sobic005G059800--Sobic001G194200 Sobic003G155100 Sobic003G155100 Sobic005G059800--Sobic003G155100 Sobic003G011300 Sobic003G011300 Sobic005G059800--Sobic003G011300 Sobic008G044100 Sobic008G044100 Sobic005G059800--Sobic008G044100 Sobic008G070800 Sobic008G070800 Sobic005G059800--Sobic008G070800 Sobic003G398700 Sobic003G398700 Sobic005G059800--Sobic003G398700 Sobic010G032900--Sobic005G059800 Sobic010G139000 Sobic010G139000 Sobic010G032900--Sobic010G139000 Sobic003G170900 Sobic003G170900 Sobic010G032900--Sobic003G170900 Sobic010G032900--Sobic001G194200 Sobic001G002000 Sobic001G002000 Sobic010G032900--Sobic001G002000 Sobic010G032900--Sobic003G011300 Sobic004G291900 Sobic004G291900 Sobic010G032900--Sobic004G291900 Sobic010G032900--Sobic002G294800 Sobic002G134200 Sobic002G134200 Sobic010G032900--Sobic002G134200 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic002G325300 Sobic002G325300 Sobic006G185100--Sobic002G325300 Sobic003G253600 Sobic003G253600 Sobic006G185100--Sobic003G253600 Sobic002G257750 Sobic002G257750 Sobic006G185100--Sobic002G257750 Sobic004G140600 Sobic004G140600 Sobic006G185100--Sobic004G140600 Sobic001G392300 Sobic001G392300 Sobic006G185100--Sobic001G392300 Sobic006G185100--Sobic005G059800 Sobic003G119600 Sobic003G119600 Sobic006G185100--Sobic003G119600 Sobic001G080700 Sobic001G080700 Sobic006G185100--Sobic001G080700 Sobic006G185100--Sobic008G070800 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic004G034900 Sobic004G034900 Sobic001G194200--Sobic004G034900 Sobic003G155100--Sobic008G001200 Sobic006G219600 Sobic006G219600 Sobic003G155100--Sobic006G219600 Sobic003G155100--Sobic010G206900 Sobic001G230000 Sobic001G230000 Sobic003G155100--Sobic001G230000 Sobic001G375100 Sobic001G375100 Sobic003G155100--Sobic001G375100 Sobic003G155100--Sobic001G194200 Sobic003G155100--Sobic010G010700 Sobic009G256400 Sobic009G256400 Sobic003G155100--Sobic009G256400 Sobic003G155100--Sobic004G291900 Sobic004G134200 Sobic004G134200 Sobic003G011300--Sobic004G134200 Sobic001G374100 Sobic001G374100 Sobic003G011300--Sobic001G374100 Sobic007G116200 Sobic007G116200 Sobic003G011300--Sobic007G116200 Sobic003G011300--Sobic010G032900 Sobic004G042200 Sobic004G042200 Sobic003G011300--Sobic004G042200 Sobic003G011300--Sobic005G059800 Sobic003G011300--Sobic001G002000 Sobic003G168100 Sobic003G168100 Sobic003G011300--Sobic003G168100 Sobic010G126000 Sobic010G126000 Sobic003G011300--Sobic010G126000 Sobic008G044100--Sobic010G010700 Sobic008G044100--Sobic004G134200 Sobic008G044100--Sobic001G374100 Sobic008G044100--Sobic003G155100 Sobic008G044100--Sobic010G206900 Sobic008G044100--Sobic001G230000 Sobic008G044100--Sobic008G001200 Sobic003G389200 Sobic003G389200 Sobic008G044100--Sobic003G389200 Sobic002G316600 Sobic002G316600 Sobic008G044100--Sobic002G316600 Sobic008G070800--Sobic001G080700 Sobic008G070800--Sobic001G392300 Sobic008G070800--Sobic006G185100 Sobic008G070800--Sobic005G059800 Sobic001G151100 Sobic001G151100 Sobic008G070800--Sobic001G151100 Sobic002G047700 Sobic002G047700 Sobic008G070800--Sobic002G047700 Sobic008G070800--Sobic002G294800 Sobic001G333100 Sobic001G333100 Sobic008G070800--Sobic001G333100 Sobic002G383800 Sobic002G383800 Sobic008G070800--Sobic002G383800 Sobic003G398700--Sobic002G257750 Sobic001G456900 Sobic001G456900 Sobic003G398700--Sobic001G456900 Sobic003G398700--Sobic008G044100 Sobic010G021500 Sobic010G021500 Sobic003G398700--Sobic010G021500 Sobic007G136800 Sobic007G136800 Sobic003G398700--Sobic007G136800 Sobic004G185800 Sobic004G185800 Sobic003G398700--Sobic004G185800 Sobic003G398700--Sobic003G168100 Sobic008G113100 Sobic008G113100 Sobic003G398700--Sobic008G113100 Sobic003G398700--Sobic010G126000
Octagon: transcription factors


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