Gene annotation
Transcriptome id Sobic.008G070800.1,Sobic.008G070800.3,Sobic.008G070800.4
Synonym Sb08g006230
Functional annotation expressed protein
UniProt A0A1B6PC28
Pfam PF10155
Panther DB PTHR15975
NCBI CDD KOG4508; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G18420 : -
RAP-DB (Rice) LOC_Os12g09610.1 : expressed protein
MaizeGDB (Corn) Zm00025a025657
Brachypodium KQJ91910
Barley HORVU4Hr1G015530.1 , HORVU4Hr1G015530.2 , HORVU4Hr1G015530.3 , HORVU4Hr1G015530.4 , HORVU4Hr1G015530.5 , HORVU4Hr1G015530.6 , HORVU5Hr1G034880.1 , HORVU5Hr1G034880.2 , HORVU5Hr1G034880.3 , HORVU5Hr1G034880.4 , HORVU5Hr1G034880.5 , HORVU5Hr1G034880.7 , HORVU5Hr1G034880.8 , HORVU5Hr1G034880.9 , HORVU5Hr1G034880.18 , HORVU5Hr1G034880.19 , HORVU5Hr1G034880.13 , HORVU5Hr1G034880.10 , HORVU5Hr1G034880.16 , HORVU5Hr1G034880.17 , HORVU5Hr1G034880.14 , HORVU5Hr1G034880.15
Wheat TraesCS4D02G087600 , TraesCS4D02G087600 , TraesCS4D02G087600 , TraesCS5A02G110700 , TraesCS5A02G110700 , TraesCS4A02G225800 , TraesCS4A02G225800 , TraesCS4A02G225800 , TraesCS5B02G113700 , TraesCS5B02G113700 , TraesCS5B02G113700 , TraesCS4B02G090500 , TraesCS4B02G090500 , TraesCS4B02G090500 , TraesCS4B02G090500 , TraesCS4B02G090500 , TraesCS5D02G123600 , TraesCS5D02G123600 , TraesCS5D02G123600 , TraesCS5D02G123600
Populus -


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cDNA sequences
Sobic.008G070800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G080700 casein kinase II subunit alpha-2, putative, expressed K03097: casein kinase II subunit alpha
2 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
3 Sobic.006G185100 ranBP1 domain containing protein, expressed K14295: NUP50, nuclear pore complex protein Nup50
4 Sobic.005G059800 RNA recognition motif containing protein, putative, expressed K14407: CSTF2, cleavage stimulation factor subunit 2
5 Sobic.001G151100 CCR4-NOT transcription factor, putative, expressed K12580: CNOT3, CCR4-NOT transcription complex subunit 3
6 Sobic.002G047700 CK1_CaseinKinase_1a.6 - CK1 includes the casein kinase 1 kinases, expressed -
7 Sobic.002G294800 cyclic nucleotide-gated ion channel, putative, expressed K05391: cyclic nucleotide gated channel, plant
8 Sobic.001G333100 U-box domain-containing protein, putative, expressed K10597: UBE4B, ubiquitin conjugation factor E4 B
9 Sobic.002G383800 GTP-binding protein, putative, expressed K06944: uncharacterized protein
10 Sobic.003G441900 Leucine Rich Repeat family protein, expressed -
11 Sobic.002G359400 transporter-related, putative, expressed K15285: solute carrier family 35, member E3
12 Sobic.008G082500 alanyl-tRNA synthetase, putative, expressed K01872: AARS, alanyl-tRNA synthetase
13 Sobic.002G091600 methyltransferase, putative, expressed -
14 Sobic.003G221400 tetratricopeptide repeat domain containing protein, expressed K00670: NAA30, N-alpha-acetyltransferase 30
15 Sobic.003G155900 mov34/MPN/PAD-1 family protein, expressed K11866: STAMBP, STAM-binding protein
16 Sobic.007G136800 polypyrimidine tract-binding protein, putative, expressed K14948: PTBP2, polypyrimidine tract-binding protein 2
17 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
18 Sobic.008G063300 exonuclease, putative, expressed K14570: REX1, REXO1, RNA exonuclease 1
19 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1
20 Sobic.004G140600 exonuclease, putative, expressed K13288: orn, REX2, oligoribonuclease


Gene co-expression network
sample Sobic008G070800 Sobic008G070800 Sobic001G080700 Sobic001G080700 Sobic008G070800--Sobic001G080700 Sobic001G392300 Sobic001G392300 Sobic008G070800--Sobic001G392300 Sobic006G185100 Sobic006G185100 Sobic008G070800--Sobic006G185100 Sobic005G059800 Sobic005G059800 Sobic008G070800--Sobic005G059800 Sobic001G151100 Sobic001G151100 Sobic008G070800--Sobic001G151100 Sobic002G047700 Sobic002G047700 Sobic008G070800--Sobic002G047700 Sobic002G294800 Sobic002G294800 Sobic008G070800--Sobic002G294800 Sobic001G333100 Sobic001G333100 Sobic008G070800--Sobic001G333100 Sobic002G383800 Sobic002G383800 Sobic008G070800--Sobic002G383800 Sobic001G080700--Sobic001G392300 Sobic009G165800 Sobic009G165800 Sobic001G080700--Sobic009G165800 Sobic010G251000 Sobic010G251000 Sobic001G080700--Sobic010G251000 Sobic004G066200 Sobic004G066200 Sobic001G080700--Sobic004G066200 Sobic003G264200 Sobic003G264200 Sobic001G080700--Sobic003G264200 Sobic009G222500 Sobic009G222500 Sobic001G080700--Sobic009G222500 Sobic006G101700 Sobic006G101700 Sobic001G080700--Sobic006G101700 Sobic001G332500 Sobic001G332500 Sobic001G080700--Sobic001G332500 Sobic001G007000 Sobic001G007000 Sobic001G080700--Sobic001G007000 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic009G044800 Sobic009G044800 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic002G325300 Sobic002G325300 Sobic006G185100--Sobic002G325300 Sobic003G253600 Sobic003G253600 Sobic006G185100--Sobic003G253600 Sobic002G257750 Sobic002G257750 Sobic006G185100--Sobic002G257750 Sobic004G140600 Sobic004G140600 Sobic006G185100--Sobic004G140600 Sobic006G185100--Sobic001G392300 Sobic006G185100--Sobic005G059800 Sobic003G119600 Sobic003G119600 Sobic006G185100--Sobic003G119600 Sobic006G185100--Sobic001G080700 Sobic006G185100--Sobic008G070800 Sobic010G032900 Sobic010G032900 Sobic005G059800--Sobic010G032900 Sobic005G059800--Sobic002G294800 Sobic005G059800--Sobic006G185100 Sobic001G194200 Sobic001G194200 Sobic005G059800--Sobic001G194200 Sobic003G155100 Sobic003G155100 Sobic005G059800--Sobic003G155100 Sobic003G011300 Sobic003G011300 Sobic005G059800--Sobic003G011300 Sobic008G044100 Sobic008G044100 Sobic005G059800--Sobic008G044100 Sobic005G059800--Sobic008G070800 Sobic003G398700 Sobic003G398700 Sobic005G059800--Sobic003G398700 Sobic001G058200 Sobic001G058200 Sobic001G151100--Sobic001G058200 Sobic001G433800 Sobic001G433800 Sobic001G151100--Sobic001G433800 Sobic005G167700 Sobic005G167700 Sobic001G151100--Sobic005G167700 Sobic001G087600 Sobic001G087600 Sobic001G151100--Sobic001G087600 Sobic002G308700 Sobic002G308700 Sobic001G151100--Sobic002G308700 Sobic005G162500 Sobic005G162500 Sobic001G151100--Sobic005G162500 Sobic002G133300 Sobic002G133300 Sobic001G151100--Sobic002G133300 Sobic001G542400 Sobic001G542400 Sobic001G151100--Sobic001G542400 Sobic004G248600 Sobic004G248600 Sobic001G151100--Sobic004G248600 Sobic006G180000 Sobic006G180000 Sobic002G047700--Sobic006G180000 Sobic010G020400 Sobic010G020400 Sobic002G047700--Sobic010G020400 Sobic002G047700--Sobic001G007000 Sobic001G031100 Sobic001G031100 Sobic002G047700--Sobic001G031100 Sobic007G167900 Sobic007G167900 Sobic002G047700--Sobic007G167900 Sobic002G047700--Sobic008G070800 Sobic001G014800 Sobic001G014800 Sobic002G047700--Sobic001G014800 Sobic002G047700--Sobic003G264200 Sobic002G047700--Sobic009G044800 Sobic005G027400 Sobic005G027400 Sobic002G294800--Sobic005G027400 Sobic001G241100 Sobic001G241100 Sobic002G294800--Sobic001G241100 Sobic003G355900 Sobic003G355900 Sobic002G294800--Sobic003G355900 Sobic002G211800 Sobic002G211800 Sobic002G294800--Sobic002G211800 Sobic002G294800--Sobic005G059800 Sobic001G261501 Sobic001G261501 Sobic002G294800--Sobic001G261501 Sobic002G294800--Sobic010G032900 Sobic001G389100 Sobic001G389100 Sobic002G294800--Sobic001G389100 Sobic010G013200 Sobic010G013200 Sobic002G294800--Sobic010G013200 Sobic003G264100 Sobic003G264100 Sobic001G333100--Sobic003G264100 Sobic002G020700 Sobic002G020700 Sobic001G333100--Sobic002G020700 Sobic003G221400 Sobic003G221400 Sobic001G333100--Sobic003G221400 Sobic001G192000 Sobic001G192000 Sobic001G333100--Sobic001G192000 Sobic001G333100--Sobic010G020400 Sobic002G142900 Sobic002G142900 Sobic001G333100--Sobic002G142900 Sobic010G223300 Sobic010G223300 Sobic001G333100--Sobic010G223300 Sobic001G251100 Sobic001G251100 Sobic001G333100--Sobic001G251100 Sobic008G033500 Sobic008G033500 Sobic001G333100--Sobic008G033500 Sobic002G383800--Sobic008G070800 Sobic002G383800--Sobic003G221400 Sobic001G355800 Sobic001G355800 Sobic002G383800--Sobic001G355800 Sobic002G383800--Sobic001G333100 Sobic002G131200 Sobic002G131200 Sobic002G383800--Sobic002G131200 Sobic008G054000 Sobic008G054000 Sobic002G383800--Sobic008G054000 Sobic003G311900 Sobic003G311900 Sobic002G383800--Sobic003G311900 Sobic002G311100 Sobic002G311100 Sobic002G383800--Sobic002G311100 Sobic004G131800 Sobic004G131800 Sobic002G383800--Sobic004G131800
Octagon: transcription factors


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