Gene annotation
Transcriptome id Sobic.003G164200.1
Synonym ATCUL1, AXR6, CUL1, Sb03g015000
Functional annotation cullin, putative, expressed
UniProt C5XKK4
Pfam PF10557 PF00888
Panther DB PTHR11932 PTHR11932:SF92
NCBI CDD KOG2166; Cullins KOG2167Cullins
KEGG Orthology K03347; CUL1, cullin 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT4G02570 : cullin 1
RAP-DB (Rice) LOC_Os01g27150.1 : cullin, putative, expressed
MaizeGDB (Corn) Zm00025a038067 , Zm00025a055412
Brachypodium KQK07499 , KQK07498 , KQK07500
Barley HORVU1Hr1G020390.15 , HORVU1Hr1G020390.14 , HORVU1Hr1G020390.17 , HORVU1Hr1G020390.16 , HORVU1Hr1G020390.11 , HORVU1Hr1G020390.10 , HORVU1Hr1G020390.13 , HORVU1Hr1G020390.12 , HORVU1Hr1G020390.1 , HORVU1Hr1G020400.21 , HORVU1Hr1G020390.3 , HORVU1Hr1G020390.2 , HORVU1Hr1G020390.5 , HORVU1Hr1G020390.4 , HORVU1Hr1G020400.26 , HORVU1Hr1G020390.6 , HORVU1Hr1G020390.9 , HORVU1Hr1G020390.8 , HORVU1Hr1G020400.4 , HORVU1Hr1G020400.8 , HORVU1Hr1G020400.1 , HORVU1Hr1G020400.3 , HORVU1Hr1G020400.2 , HORVU1Hr1G020400.5 , HORVU1Hr1G020400.7 , HORVU1Hr1G020400.6 , HORVU1Hr1G020400.9 , HORVU1Hr1G020400.14 , HORVU1Hr1G020400.17 , HORVU1Hr1G020400.16 , HORVU1Hr1G020400.11 , HORVU1Hr1G020400.12 , HORVU1Hr1G020400.15 , HORVU1Hr1G020400.10 , HORVU1Hr1G020400.13 , HORVU1Hr1G020400.19 , HORVU1Hr1G020400.18 , HORVU1Hr1G020400.22 , HORVU1Hr1G020400.20 , HORVU1Hr1G020400.23 , HORVU1Hr1G020400.24 , HORVU1Hr1G020400.25 , HORVU1Hr1G020390.7 , HORVU1Hr1G020400.27
Wheat TraesCS1A02G090000 , TraesCS1A02G090000 , TraesCS1A02G090000 , TraesCS1A02G090000 , TraesCS1A02G089900 , TraesCS1A02G089900 , TraesCS1D02G098500 , TraesCS1D02G098500 , TraesCS1D02G098500 , TraesCS1D02G098500 , TraesCS1B02G118000 , TraesCS1B02G118000 , TraesCS1B02G118000 , TraesCS1D02G098400 , TraesCS1D02G098400 , TraesCS1B02G117900
Populus PNT26047 , PNT26048 , PNT26049 , PNT14306 , PNT14307


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cDNA sequences
Sobic.003G164200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
2 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
3 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
4 Sobic.009G088000 expressed protein -
5 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
6 Sobic.006G041600 WD domain, G-beta repeat domain containing protein, expressed K17985: activating molecule in BECN1-regulated autophagy protein 1
7 Sobic.002G133300 ZOS9-20 - C2H2 zinc finger protein, expressed K14400: pre-mRNA cleavage complex 2 protein Pcf11
8 Sobic.010G275500 EF hand family protein, putative, expressed -
9 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
10 Sobic.004G136300 Sec1 family transport protein, putative, expressed K15292: STXBP1, syntaxin-binding protein 1
11 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
12 Sobic.002G397500 SAC3/GANP family protein, expressed -
13 Sobic.007G132100 myrosinase precursor, putative, expressed -
14 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
15 Sobic.001G334700 OsWAK28 - OsWAK receptor-like protein kinase, expressed -
16 Sobic.001G002000 protein kinase domain containing protein, expressed -
17 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
18 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
19 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
20 Sobic.008G112800 pre-mRNA-processing factor 6, putative, expressed K12855: PRPF6, pre-mRNA-processing factor 6


Gene co-expression network
sample Sobic003G164200 Sobic003G164200 Sobic008G118200 Sobic008G118200 Sobic003G164200--Sobic008G118200 Sobic001G392300 Sobic001G392300 Sobic003G164200--Sobic001G392300 Sobic008G089100 Sobic008G089100 Sobic003G164200--Sobic008G089100 Sobic009G088000 Sobic009G088000 Sobic003G164200--Sobic009G088000 Sobic004G039600 Sobic004G039600 Sobic003G164200--Sobic004G039600 Sobic006G041600 Sobic006G041600 Sobic003G164200--Sobic006G041600 Sobic002G133300 Sobic002G133300 Sobic003G164200--Sobic002G133300 Sobic010G275500 Sobic010G275500 Sobic003G164200--Sobic010G275500 Sobic010G112100 Sobic010G112100 Sobic003G164200--Sobic010G112100 Sobic007G163100 Sobic007G163100 Sobic008G118200--Sobic007G163100 Sobic010G069100 Sobic010G069100 Sobic008G118200--Sobic010G069100 Sobic003G408600 Sobic003G408600 Sobic008G118200--Sobic003G408600 Sobic009G044800 Sobic009G044800 Sobic008G118200--Sobic009G044800 Sobic008G118200--Sobic010G112100 Sobic005G112300 Sobic005G112300 Sobic008G118200--Sobic005G112300 Sobic001G207000 Sobic001G207000 Sobic008G118200--Sobic001G207000 Sobic001G289600 Sobic001G289600 Sobic008G118200--Sobic001G289600 Sobic007G105100 Sobic007G105100 Sobic008G118200--Sobic007G105100 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic002G045600 Sobic002G045600 Sobic008G089100--Sobic002G045600 Sobic008G089100--Sobic001G207000 Sobic008G089100--Sobic001G392300 Sobic008G089100--Sobic003G408600 Sobic003G313500 Sobic003G313500 Sobic008G089100--Sobic003G313500 Sobic001G194200 Sobic001G194200 Sobic008G089100--Sobic001G194200 Sobic001G390800 Sobic001G390800 Sobic008G089100--Sobic001G390800 Sobic004G135400 Sobic004G135400 Sobic008G089100--Sobic004G135400 Sobic008G089100--Sobic003G164200 Sobic008G002500 Sobic008G002500 Sobic009G088000--Sobic008G002500 Sobic006G040800 Sobic006G040800 Sobic009G088000--Sobic006G040800 Sobic002G126300 Sobic002G126300 Sobic009G088000--Sobic002G126300 Sobic003G294600 Sobic003G294600 Sobic009G088000--Sobic003G294600 Sobic009G088000--Sobic003G164200 Sobic005G200900 Sobic005G200900 Sobic009G088000--Sobic005G200900 Sobic002G137200 Sobic002G137200 Sobic009G088000--Sobic002G137200 Sobic004G355800 Sobic004G355800 Sobic009G088000--Sobic004G355800 Sobic010G236400 Sobic010G236400 Sobic009G088000--Sobic010G236400 Sobic006G012500 Sobic006G012500 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic007G132100 Sobic007G132100 Sobic004G039600--Sobic007G132100 Sobic008G099800 Sobic008G099800 Sobic004G039600--Sobic008G099800 Sobic006G126100 Sobic006G126100 Sobic004G039600--Sobic006G126100 Sobic010G053800 Sobic010G053800 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic001G534800 Sobic001G534800 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500 Sobic006G041600--Sobic001G194200 Sobic001G433800 Sobic001G433800 Sobic006G041600--Sobic001G433800 Sobic004G291900 Sobic004G291900 Sobic006G041600--Sobic004G291900 Sobic006G252900 Sobic006G252900 Sobic006G041600--Sobic006G252900 Sobic001G002000 Sobic001G002000 Sobic006G041600--Sobic001G002000 Sobic001G289800 Sobic001G289800 Sobic006G041600--Sobic001G289800 Sobic006G041600--Sobic002G133300 Sobic004G185800 Sobic004G185800 Sobic006G041600--Sobic004G185800 Sobic006G041600--Sobic001G207000 Sobic004G276400 Sobic004G276400 Sobic002G133300--Sobic004G276400 Sobic002G133300--Sobic001G433800 Sobic001G004400 Sobic001G004400 Sobic002G133300--Sobic001G004400 Sobic002G133300--Sobic001G289800 Sobic003G072200 Sobic003G072200 Sobic002G133300--Sobic003G072200 Sobic002G397500 Sobic002G397500 Sobic002G133300--Sobic002G397500 Sobic004G131300 Sobic004G131300 Sobic002G133300--Sobic004G131300 Sobic002G133300--Sobic001G194200 Sobic001G493700 Sobic001G493700 Sobic002G133300--Sobic001G493700 Sobic010G275500--Sobic010G053800 Sobic004G072100 Sobic004G072100 Sobic010G275500--Sobic004G072100 Sobic010G275500--Sobic006G012500 Sobic001G155000 Sobic001G155000 Sobic010G275500--Sobic001G155000 Sobic010G116600 Sobic010G116600 Sobic010G275500--Sobic010G116600 Sobic010G275500--Sobic010G069100 Sobic009G119000 Sobic009G119000 Sobic010G275500--Sobic009G119000 Sobic007G183900 Sobic007G183900 Sobic010G275500--Sobic007G183900 Sobic010G275500--Sobic002G397500 Sobic003G360400 Sobic003G360400 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic001G540400 Sobic001G540400 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200
Octagon: transcription factors


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