Gene annotation
Transcriptome id Sobic.008G118200.1
Synonym MAG4, GC6, Sb08g017190
Functional annotation vesicle tethering family protein, putative, expressed
UniProt C5YPE0
Pfam PF04871 PF04869
Panther DB PTHR10013
NCBI CDD KOG0946; ER-Golgi vesicle-tethering protein p115
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0008565obsolete protein transporter activity GO:0006886intracellular protein transport GO:0005737cytoplasm GO:0000139Golgi membrane


Orthologs (automatic annotation)
TAIR AT3G27530 : golgin candidate 6
RAP-DB (Rice) LOC_Os12g35360.1 : vesicle tethering family protein, putative, expressed
MaizeGDB (Corn) Zm00025a052213 , Zm00025a056920 , Zm00025a025540 , Zm00025a046385 , Zm00025a057231 , Zm00025a001969 , Zm00025a028413 , Zm00025a057229 , Zm00025a028840 , Zm00025a024126 , Zm00025a037615 , Zm00025a029884 , Zm00025a054352
Brachypodium KQJ86453
Barley HORVU5Hr1G025420.16 , HORVU5Hr1G025420.17 , HORVU5Hr1G025420.14 , HORVU5Hr1G025420.15 , HORVU5Hr1G025420.12 , HORVU5Hr1G025420.13 , HORVU5Hr1G025420.10 , HORVU5Hr1G025420.11 , HORVU5Hr1G025420.18 , HORVU5Hr1G025420.4 , HORVU5Hr1G025420.5 , HORVU5Hr1G025420.3 , HORVU5Hr1G025420.8 , HORVU5Hr1G025420.9 , HORVU5Hr1G025420.6 , HORVU5Hr1G025420.7 , HORVU5Hr1G025420.1 , HORVU5Hr1G025420.2
Wheat TraesCS5B02G100400 , TraesCS5A02G094300 , TraesCS5D02G106600
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.008G118200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
2 Sobic.010G069100 expressed protein -
3 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
4 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
5 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
6 Sobic.005G112300 ubiquitin carboxyl-terminal hydrolase 5, putative, expressed K11835: USP4_11, ubiquitin carboxyl-terminal hydrolase 4/11
7 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
8 Sobic.001G289600 BAH domain containing protein, putative, expressed -
9 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
10 Sobic.001G493200 endonuclease/exonuclease/phosphatase family domain containing protein, expressed K12603: CNOT6, CCR4-NOT transcription complex subunit 6
11 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1
12 Sobic.003G072200 zinc finger protein, putative, expressed K11978: E3 ubiquitin-protein ligase UBR3
13 Sobic.004G274200 ara54-like RING finger protein, putative, expressed K11971: RNF14, E3 ubiquitin-protein ligase RNF14
14 Sobic.008G047800 WD domain, G-beta repeat domain containing protein, expressed K15361: WDR48, WD repeat-containing protein 48
15 Sobic.002G071500 cleavage and polyadenylation specificity factor, putative, expressed K12830: SF3B3, SAP130, splicing factor 3B subunit 3
16 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
17 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
18 Sobic.001G154900 "GL3.1/qGL3(Ortholog in rice:Qi et al., 2012, Zhang et al., 2012)"(PubMedID : 31659834)@serine/threonine protein phosphatase, putative, expressed -
19 Sobic.001G540400 expressed protein -
20 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24


Gene co-expression network
sample Sobic008G118200 Sobic008G118200 Sobic007G163100 Sobic007G163100 Sobic008G118200--Sobic007G163100 Sobic010G069100 Sobic010G069100 Sobic008G118200--Sobic010G069100 Sobic003G408600 Sobic003G408600 Sobic008G118200--Sobic003G408600 Sobic009G044800 Sobic009G044800 Sobic008G118200--Sobic009G044800 Sobic010G112100 Sobic010G112100 Sobic008G118200--Sobic010G112100 Sobic005G112300 Sobic005G112300 Sobic008G118200--Sobic005G112300 Sobic001G207000 Sobic001G207000 Sobic008G118200--Sobic001G207000 Sobic001G289600 Sobic001G289600 Sobic008G118200--Sobic001G289600 Sobic007G105100 Sobic007G105100 Sobic008G118200--Sobic007G105100 Sobic007G163100--Sobic003G408600 Sobic007G163100--Sobic008G118200 Sobic002G045600 Sobic002G045600 Sobic007G163100--Sobic002G045600 Sobic001G117200 Sobic001G117200 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic003G422500 Sobic003G422500 Sobic007G163100--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic004G113400 Sobic004G113400 Sobic007G163100--Sobic004G113400 Sobic002G071500 Sobic002G071500 Sobic010G069100--Sobic002G071500 Sobic002G264200 Sobic002G264200 Sobic010G069100--Sobic002G264200 Sobic010G069100--Sobic005G112300 Sobic008G047800 Sobic008G047800 Sobic010G069100--Sobic008G047800 Sobic008G009700 Sobic008G009700 Sobic010G069100--Sobic008G009700 Sobic001G154900 Sobic001G154900 Sobic010G069100--Sobic001G154900 Sobic004G146500 Sobic004G146500 Sobic010G069100--Sobic004G146500 Sobic007G065400 Sobic007G065400 Sobic010G069100--Sobic007G065400 Sobic009G005500 Sobic009G005500 Sobic010G069100--Sobic009G005500 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic010G112100--Sobic003G360400 Sobic010G112100--Sobic005G112300 Sobic009G256300 Sobic009G256300 Sobic010G112100--Sobic009G256300 Sobic010G112100--Sobic003G408600 Sobic010G112100--Sobic001G433800 Sobic010G112100--Sobic001G540400 Sobic007G062800 Sobic007G062800 Sobic010G112100--Sobic007G062800 Sobic004G242400 Sobic004G242400 Sobic010G112100--Sobic004G242400 Sobic003G389200 Sobic003G389200 Sobic010G112100--Sobic003G389200 Sobic001G363500 Sobic001G363500 Sobic005G112300--Sobic001G363500 Sobic005G112300--Sobic007G062800 Sobic005G112300--Sobic010G112100 Sobic010G139000 Sobic010G139000 Sobic005G112300--Sobic010G139000 Sobic005G112300--Sobic007G105100 Sobic005G112300--Sobic001G540400 Sobic010G010700 Sobic010G010700 Sobic005G112300--Sobic010G010700 Sobic005G112300--Sobic005G008800 Sobic005G112300--Sobic002G071500 Sobic006G041600 Sobic006G041600 Sobic001G207000--Sobic006G041600 Sobic001G207000--Sobic009G044800 Sobic001G207000--Sobic002G045600 Sobic001G207000--Sobic007G105100 Sobic001G194200 Sobic001G194200 Sobic001G207000--Sobic001G194200 Sobic001G207000--Sobic008G118200 Sobic003G195000 Sobic003G195000 Sobic001G207000--Sobic003G195000 Sobic008G089100 Sobic008G089100 Sobic001G207000--Sobic008G089100 Sobic010G123600 Sobic010G123600 Sobic001G207000--Sobic010G123600 Sobic001G289600--Sobic001G540400 Sobic004G034900 Sobic004G034900 Sobic001G289600--Sobic004G034900 Sobic001G289600--Sobic001G289800 Sobic001G289600--Sobic003G422500 Sobic001G365900 Sobic001G365900 Sobic001G289600--Sobic001G365900 Sobic009G191000 Sobic009G191000 Sobic001G289600--Sobic009G191000 Sobic001G289600--Sobic005G008800 Sobic001G289600--Sobic007G105100 Sobic001G289600--Sobic010G010700 Sobic007G105100--Sobic005G112300 Sobic007G105100--Sobic001G289600 Sobic007G105100--Sobic003G408600 Sobic007G105100--Sobic010G010700 Sobic007G105100--Sobic007G062800 Sobic007G105100--Sobic005G008800 Sobic007G105100--Sobic001G540400 Sobic007G105100--Sobic003G360400 Sobic007G105100--Sobic010G112100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.