Gene annotation
Transcriptome id Sobic.009G044800.1
Synonym ATCUL1, AXR6, CUL1, Sb09g003820
Functional annotation cullin, putative, expressed
UniProt C5Z041
Pfam PF10557 PF00888
Panther DB PTHR11932 PTHR11932:SF92
NCBI CDD KOG2166; Cullins KOG2167Cullins
KEGG Orthology K03347; CUL1, cullin 1
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process


Orthologs (automatic annotation)
TAIR AT4G02570 : cullin 1
RAP-DB (Rice) LOC_Os05g05700.1 : cullin, putative, expressed
MaizeGDB (Corn) Zm00025a038067 , Zm00025a015561 , Zm00025a055412 , Zm00025a025110
Brachypodium KQK07499 , KQK07498 , KQK07500
Barley HORVU1Hr1G020390.15 , HORVU1Hr1G020390.14 , HORVU1Hr1G020390.17 , HORVU1Hr1G020390.16 , HORVU1Hr1G020390.11 , HORVU1Hr1G020390.10 , HORVU1Hr1G020390.13 , HORVU1Hr1G020390.12 , HORVU1Hr1G020390.1 , HORVU1Hr1G020400.21 , HORVU1Hr1G020390.3 , HORVU1Hr1G020390.2 , HORVU1Hr1G020390.5 , HORVU1Hr1G020390.4 , HORVU1Hr1G020400.26 , HORVU1Hr1G020390.6 , HORVU1Hr1G020390.9 , HORVU1Hr1G020390.8 , HORVU1Hr1G020400.9 , HORVU1Hr1G020400.8 , HORVU1Hr1G020400.1 , HORVU1Hr1G020400.3 , HORVU1Hr1G020400.2 , HORVU1Hr1G020400.5 , HORVU1Hr1G020400.4 , HORVU1Hr1G020400.7 , HORVU1Hr1G020400.6 , HORVU1Hr1G020400.14 , HORVU1Hr1G020400.17 , HORVU1Hr1G020400.16 , HORVU1Hr1G020400.11 , HORVU1Hr1G020400.10 , HORVU1Hr1G020400.13 , HORVU1Hr1G020400.12 , HORVU1Hr1G020400.15 , HORVU1Hr1G020400.19 , HORVU1Hr1G020400.18 , HORVU1Hr1G020400.22 , HORVU1Hr1G020400.20 , HORVU1Hr1G020400.23 , HORVU1Hr1G020400.24 , HORVU1Hr1G020390.7 , HORVU1Hr1G020400.27 , HORVU1Hr1G020400.25
Wheat TraesCS1A02G090000 , TraesCS1A02G090000 , TraesCS1A02G090000 , TraesCS1A02G090000 , TraesCS1D02G098500 , TraesCS1D02G098500 , TraesCS1D02G098500 , TraesCS1B02G118000 , TraesCS1B02G118000 , TraesCS1B02G118000 , TraesCS1D02G098500 , TraesCS1A02G089900 , TraesCS1A02G089900 , TraesCS1B02G117900 , TraesCS1D02G098400 , TraesCS1D02G098400
Populus PNT26047 , PNT26048 , PNT26049 , PNT14306 , PNT14307


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cDNA sequences
Sobic.009G044800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
2 Sobic.003G352200 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
3 Sobic.001G227400 WD domain, G-beta repeat domain containing protein, expressed -
4 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
5 Sobic.010G116600 FHA domain containing protein, putative, expressed -
6 Sobic.007G218000 chloride transporter, chloride channel family, putative, expressed -
7 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
8 Sobic.001G433800 lissencephaly type-1-like homology motif, putative, expressed -
9 Sobic.007G183900 ubiquitin family protein, putative, expressed -
10 Sobic.006G240100 BRCA1-associated protein, putative, expressed K10632: BRCA1-associated protein
11 Sobic.009G177500 CCR4-NOT transcription factor, putative, expressed K12605: CNOT2, CCR4-NOT transcription complex subunit 2
12 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
13 Sobic.001G354600 SAP domain containing protein, expressed K12875: ACIN1, apoptotic chromatin condensation inducer in the nucleus
14 Sobic.002G154000 EDM2, putative, expressed -
15 Sobic.008G118200 vesicle tethering family protein, putative, expressed -
16 Sobic.007G132100 myrosinase precursor, putative, expressed -
17 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.001G313700 expressed protein -
19 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
20 Sobic.003G379200 wound-responsive family protein, putative, expressed -


Gene co-expression network
sample Sobic009G044800 Sobic009G044800 Sobic003G360400 Sobic003G360400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic002G045600 Sobic002G045600 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic010G112100 Sobic010G112100 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic005G112300 Sobic005G112300 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic003G352200--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic003G352200--Sobic001G473600 Sobic002G034600 Sobic002G034600 Sobic003G352200--Sobic002G034600 Sobic004G274200 Sobic004G274200 Sobic003G352200--Sobic004G274200 Sobic003G155900 Sobic003G155900 Sobic003G352200--Sobic003G155900 Sobic004G066200 Sobic004G066200 Sobic003G352200--Sobic004G066200 Sobic003G352200--Sobic002G045600 Sobic001G109800 Sobic001G109800 Sobic003G352200--Sobic001G109800 Sobic001G088100 Sobic001G088100 Sobic003G352200--Sobic001G088100 Sobic001G227400--Sobic009G044800 Sobic001G227400--Sobic007G218000 Sobic001G493200 Sobic001G493200 Sobic001G227400--Sobic001G493200 Sobic001G493700 Sobic001G493700 Sobic001G227400--Sobic001G493700 Sobic006G088200 Sobic006G088200 Sobic001G227400--Sobic006G088200 Sobic009G084900 Sobic009G084900 Sobic001G227400--Sobic009G084900 Sobic003G195000 Sobic003G195000 Sobic001G227400--Sobic003G195000 Sobic005G172500 Sobic005G172500 Sobic001G227400--Sobic005G172500 Sobic001G289800 Sobic001G289800 Sobic001G227400--Sobic001G289800 Sobic003G408600 Sobic003G408600 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic002G071500 Sobic002G071500 Sobic010G116600--Sobic002G071500 Sobic002G299700 Sobic002G299700 Sobic010G116600--Sobic002G299700 Sobic003G093800 Sobic003G093800 Sobic010G116600--Sobic003G093800 Sobic010G116600--Sobic009G044800 Sobic004G072100 Sobic004G072100 Sobic010G116600--Sobic004G072100 Sobic010G236400 Sobic010G236400 Sobic010G116600--Sobic010G236400 Sobic010G275500 Sobic010G275500 Sobic010G116600--Sobic010G275500 Sobic010G116600--Sobic003G408600 Sobic010G053800 Sobic010G053800 Sobic010G116600--Sobic010G053800 Sobic007G132100 Sobic007G132100 Sobic007G218000--Sobic007G132100 Sobic007G218000--Sobic004G072100 Sobic002G112700 Sobic002G112700 Sobic007G218000--Sobic002G112700 Sobic006G131000 Sobic006G131000 Sobic007G218000--Sobic006G131000 Sobic007G218000--Sobic009G044800 Sobic010G204400 Sobic010G204400 Sobic007G218000--Sobic010G204400 Sobic006G012500 Sobic006G012500 Sobic007G218000--Sobic006G012500 Sobic009G249700 Sobic009G249700 Sobic007G218000--Sobic009G249700 Sobic009G092400 Sobic009G092400 Sobic007G218000--Sobic009G092400 Sobic001G025000--Sobic003G360400 Sobic001G025000--Sobic009G044800 Sobic001G025000--Sobic003G389200 Sobic001G025000--Sobic003G408600 Sobic001G025000--Sobic001G354600 Sobic001G025000--Sobic010G112100 Sobic001G025000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G025000--Sobic007G105100 Sobic001G063700 Sobic001G063700 Sobic001G025000--Sobic001G063700 Sobic001G433800--Sobic010G112100 Sobic001G433800--Sobic003G360400 Sobic001G433800--Sobic007G063000 Sobic001G433800--Sobic005G112300 Sobic004G242400 Sobic004G242400 Sobic001G433800--Sobic004G242400 Sobic002G133300 Sobic002G133300 Sobic001G433800--Sobic002G133300 Sobic001G363500 Sobic001G363500 Sobic001G433800--Sobic001G363500 Sobic006G252900 Sobic006G252900 Sobic001G433800--Sobic006G252900 Sobic006G041600 Sobic006G041600 Sobic001G433800--Sobic006G041600 Sobic003G416700 Sobic003G416700 Sobic007G183900--Sobic003G416700 Sobic006G118700 Sobic006G118700 Sobic007G183900--Sobic006G118700 Sobic007G183900--Sobic003G360400 Sobic007G183900--Sobic010G236400 Sobic007G183900--Sobic009G044800 Sobic010G069100 Sobic010G069100 Sobic007G183900--Sobic010G069100 Sobic007G183900--Sobic010G275500 Sobic007G183900--Sobic001G354600 Sobic002G264200 Sobic002G264200 Sobic007G183900--Sobic002G264200
Octagon: transcription factors


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