Gene annotation
Transcriptome id Sobic.002G045600.1
Synonym Sb02g003890, SLK2
Functional annotation transcriptional corepressor SEUSS, putative, expressed
UniProt A0A1B6Q9A8
Pfam PF01803
Panther DB PTHR10378 PTHR10378:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005634; nucleus GO:0003712transcription coregulator activity


Orthologs (automatic annotation)
TAIR AT5G62090 : SEUSS-like 2
RAP-DB (Rice) LOC_Os06g03600.1 : transcriptional corepressor SEUSS, putative, expressed
MaizeGDB (Corn) Zm00025a045099 , Zm00025a041334 , Zm00025a050226
Brachypodium KQK19637
Barley HORVU7Hr1G029650.9 , HORVU7Hr1G029650.8 , HORVU7Hr1G029650.2 , HORVU7Hr1G029650.5 , HORVU7Hr1G029650.4 , HORVU7Hr1G029650.11 , HORVU7Hr1G029650.10 , HORVU7Hr1G029650.6 , HORVU7Hr1G010050.1 , HORVU7Hr1G010050.3 , HORVU7Hr1G010050.2 , HORVU7Hr1G010050.7 , HORVU7Hr1G010050.6 , HORVU7Hr1G010050.5 , HORVU7Hr1G010050.4 , HORVU7Hr1G010050.8
Wheat TraesCS7D02G146100 , TraesCS7A02G054900 , TraesCS7A02G054900 , TraesCS7D02G050000 , TraesCS7D02G050000 , TraesCS4A02G441500 , TraesCS7D02G050000 , TraesCS7A02G520700 , TraesCS7D02G050000 , TraesCS7D02G510400 , TraesCS7D02G510400 , TraesCS7B02G047100 , TraesCS7B02G047100 , TraesCS7D02G146100 , TraesCS7D02G050000 , TraesCS7B02G047100 , TraesCS7B02G047100 , TraesCS7B02G047100 , TraesCS7A02G520700 , TraesCS7D02G146100 , TraesCS7A02G144600 , TraesCS7A02G144600 , TraesCS7A02G144600 , TraesCS7A02G144600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
2 Sobic.009G027300 MYB family transcription factor, putative, expressed K04650: NCOR1, nuclear receptor co-repressor 1
3 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
4 Sobic.007G163100 expressed protein K14972: PAXIP1, PAX-interacting protein 1
5 Sobic.003G360400 ulp1 protease family protein, putative, expressed K08596: sentrin-specific protease 7
6 Sobic.001G313700 expressed protein -
7 Sobic.004G200200 joka2, putative, expressed K17987: next to BRCA1 gene 1 protein
8 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
9 Sobic.003G422500 expressed protein -
10 Sobic.003G389200 Rad21 / Rec8 like protein, putative, expressed K06670: SCC1, MCD1, cohesin complex subunit SCC1
11 Sobic.003G313500 MATH domain containing protein, expressed -
12 Sobic.010G112100 transcription factor jumonji, putative, expressed K11446: KDM5, [histone H3]-trimethyl-L-lysine4 demethylase
13 Sobic.001G540400 expressed protein -
14 Sobic.010G139600 STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K08835: OXSR1, serine/threonine-protein kinase OSR1/STK39
15 Sobic.001G050200 expressed protein -
16 Sobic.002G366400 histone deacetylase, putative, expressed K11407: histone deacetylase 6
17 Sobic.009G053900 HECT-domain domain containing protein, expressed K10589: ubiquitin-protein ligase E3 C
18 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -
19 Sobic.001G025000 FACT complex subunit SPT16, putative, expressed -
20 Sobic.001G457900 expressed protein -


Gene co-expression network
sample Sobic002G045600 Sobic002G045600 Sobic003G408600 Sobic003G408600 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic009G044800 Sobic009G044800 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic001G207000 Sobic001G207000 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic008G132600 Sobic008G132600 Sobic009G027300--Sobic008G132600 Sobic009G027300--Sobic002G045600 Sobic004G331100 Sobic004G331100 Sobic009G027300--Sobic004G331100 Sobic009G027300--Sobic003G422500 Sobic002G008900 Sobic002G008900 Sobic009G027300--Sobic002G008900 Sobic003G101400 Sobic003G101400 Sobic009G027300--Sobic003G101400 Sobic001G050200 Sobic001G050200 Sobic009G027300--Sobic001G050200 Sobic009G191000 Sobic009G191000 Sobic009G027300--Sobic009G191000 Sobic007G075400 Sobic007G075400 Sobic009G027300--Sobic007G075400 Sobic009G044800--Sobic003G360400 Sobic003G352200 Sobic003G352200 Sobic009G044800--Sobic003G352200 Sobic001G227400 Sobic001G227400 Sobic009G044800--Sobic001G227400 Sobic009G044800--Sobic002G045600 Sobic010G116600 Sobic010G116600 Sobic009G044800--Sobic010G116600 Sobic007G218000 Sobic007G218000 Sobic009G044800--Sobic007G218000 Sobic001G025000 Sobic001G025000 Sobic009G044800--Sobic001G025000 Sobic001G433800 Sobic001G433800 Sobic009G044800--Sobic001G433800 Sobic007G183900 Sobic007G183900 Sobic009G044800--Sobic007G183900 Sobic007G163100--Sobic003G408600 Sobic008G118200 Sobic008G118200 Sobic007G163100--Sobic008G118200 Sobic007G163100--Sobic002G045600 Sobic001G117200 Sobic001G117200 Sobic007G163100--Sobic001G117200 Sobic003G072200 Sobic003G072200 Sobic007G163100--Sobic003G072200 Sobic007G163100--Sobic003G422500 Sobic007G163100--Sobic001G540400 Sobic001G289800 Sobic001G289800 Sobic007G163100--Sobic001G289800 Sobic004G113400 Sobic004G113400 Sobic007G163100--Sobic004G113400 Sobic003G360400--Sobic010G112100 Sobic002G154000 Sobic002G154000 Sobic003G360400--Sobic002G154000 Sobic001G354600 Sobic001G354600 Sobic003G360400--Sobic001G354600 Sobic003G360400--Sobic001G433800 Sobic003G389200 Sobic003G389200 Sobic003G360400--Sobic003G389200 Sobic003G360400--Sobic009G044800 Sobic003G360400--Sobic005G112300 Sobic007G063000 Sobic007G063000 Sobic003G360400--Sobic007G063000 Sobic009G256300 Sobic009G256300 Sobic003G360400--Sobic009G256300 Sobic001G313700--Sobic003G360400 Sobic001G313700--Sobic002G045600 Sobic001G313700--Sobic009G044800 Sobic001G313700--Sobic010G112100 Sobic001G313700--Sobic003G408600 Sobic001G273700 Sobic001G273700 Sobic001G313700--Sobic001G273700 Sobic001G313700--Sobic002G154000 Sobic008G099800 Sobic008G099800 Sobic001G313700--Sobic008G099800 Sobic001G457900 Sobic001G457900 Sobic001G313700--Sobic001G457900 Sobic004G200200--Sobic002G045600 Sobic001G146800 Sobic001G146800 Sobic004G200200--Sobic001G146800 Sobic003G139900 Sobic003G139900 Sobic004G200200--Sobic003G139900 Sobic004G200200--Sobic003G408600 Sobic004G200200--Sobic002G008900 Sobic004G200200--Sobic009G191000 Sobic004G200200--Sobic001G058700 Sobic004G200200--Sobic001G289800 Sobic004G200200--Sobic003G422500 Sobic006G041600 Sobic006G041600 Sobic001G207000--Sobic006G041600 Sobic001G207000--Sobic009G044800 Sobic001G207000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G207000--Sobic007G105100 Sobic001G194200 Sobic001G194200 Sobic001G207000--Sobic001G194200 Sobic001G207000--Sobic008G118200 Sobic003G195000 Sobic003G195000 Sobic001G207000--Sobic003G195000 Sobic008G089100 Sobic008G089100 Sobic001G207000--Sobic008G089100 Sobic010G123600 Sobic010G123600 Sobic001G207000--Sobic010G123600 Sobic002G411600 Sobic002G411600 Sobic003G422500--Sobic002G411600 Sobic003G422500--Sobic009G191000 Sobic001G289600 Sobic001G289600 Sobic003G422500--Sobic001G289600 Sobic009G165700 Sobic009G165700 Sobic003G422500--Sobic009G165700 Sobic003G422500--Sobic002G008900 Sobic004G034900 Sobic004G034900 Sobic003G422500--Sobic004G034900 Sobic003G422500--Sobic001G289800 Sobic003G422500--Sobic001G540400 Sobic003G422500--Sobic008G132600
Octagon: transcription factors


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