Gene annotation
Transcriptome id Sobic.008G089100.1
Synonym Sb08g010420
Functional annotation armadillo/beta-catenin repeat family protein, putative, expressed
UniProt A0A1B6PCE4
Pfam PF04564 PF13646
Panther DB PTHR22849 PTHR22849:SF4
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016567; protein ubiquitination GO:0004842ubiquitin-protein transferase activity


Orthologs (automatic annotation)
TAIR AT1G76390 : ARM repeat superfamily protein
RAP-DB (Rice) LOC_Os12g17900.1 : armadillo/beta-catenin repeat family protein, putative, expressed
MaizeGDB (Corn) Zm00025a054103 , Zm00025a024965
Brachypodium PNT65234 , PNT65235 , KQJ91687
Barley HORVU5Hr1G029950.10 , HORVU5Hr1G029950.11 , HORVU5Hr1G029950.8 , HORVU5Hr1G029950.9 , HORVU5Hr1G029950.4 , HORVU5Hr1G029950.5 , HORVU5Hr1G029950.6 , HORVU5Hr1G029950.7
Wheat TraesCS5A02G111000 , TraesCS5A02G111000 , TraesCS5A02G111000 , TraesCS5B02G110000 , TraesCS5B02G110000 , TraesCS5B02G110000 , TraesCS5B02G110000 , TraesCS5D02G123100 , TraesCS5D02G123100 , TraesCS5D02G123100
Populus -


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cDNA sequences
Sobic.008G089100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G045600 transcriptional corepressor SEUSS, putative, expressed -
2 Sobic.001G207000 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
3 Sobic.001G392300 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12820: DHX15, pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43
4 Sobic.003G408600 GYF domain containing protein, putative, expressed K18730: PERQ amino acid-rich with GYF domain-containing protein
5 Sobic.003G313500 MATH domain containing protein, expressed -
6 Sobic.001G194200 diacylglycerol kinase, putative, expressed -
7 Sobic.001G390800 transcription factor HBP-1b, putative, expressed K14431: transcription factor TGA
8 Sobic.004G135400 expressed protein -
9 Sobic.003G164200 cullin, putative, expressed K03347: CUL1, cullin 1
10 Sobic.009G044800 cullin, putative, expressed K03347: CUL1, cullin 1
11 Sobic.007G105100 STE_MEK_ste7_MAP2K.8 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed K04368: MAP2K1, mitogen-activated protein kinase kinase 1
12 Sobic.001G085300 phytosulfokine receptor precursor, putative, expressed -
13 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
14 Sobic.003G169600 mitochondrial carrier protein, putative, expressed K15115: SLC25A32, solute carrier family 25 (mitochondrial folate transporter), member 32
15 Sobic.001G522600 PHD-finger domain containing protein, putative, expressed -
16 Sobic.003G422500 expressed protein -
17 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
18 Sobic.010G118950 - -
19 Sobic.003G247500 expressed protein -
20 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1


Gene co-expression network
sample Sobic008G089100 Sobic008G089100 Sobic002G045600 Sobic002G045600 Sobic008G089100--Sobic002G045600 Sobic001G207000 Sobic001G207000 Sobic008G089100--Sobic001G207000 Sobic001G392300 Sobic001G392300 Sobic008G089100--Sobic001G392300 Sobic003G408600 Sobic003G408600 Sobic008G089100--Sobic003G408600 Sobic003G313500 Sobic003G313500 Sobic008G089100--Sobic003G313500 Sobic001G194200 Sobic001G194200 Sobic008G089100--Sobic001G194200 Sobic001G390800 Sobic001G390800 Sobic008G089100--Sobic001G390800 Sobic004G135400 Sobic004G135400 Sobic008G089100--Sobic004G135400 Sobic003G164200 Sobic003G164200 Sobic008G089100--Sobic003G164200 Sobic002G045600--Sobic003G408600 Sobic009G027300 Sobic009G027300 Sobic002G045600--Sobic009G027300 Sobic009G044800 Sobic009G044800 Sobic002G045600--Sobic009G044800 Sobic007G163100 Sobic007G163100 Sobic002G045600--Sobic007G163100 Sobic003G360400 Sobic003G360400 Sobic002G045600--Sobic003G360400 Sobic001G313700 Sobic001G313700 Sobic002G045600--Sobic001G313700 Sobic004G200200 Sobic004G200200 Sobic002G045600--Sobic004G200200 Sobic002G045600--Sobic001G207000 Sobic003G422500 Sobic003G422500 Sobic002G045600--Sobic003G422500 Sobic006G041600 Sobic006G041600 Sobic001G207000--Sobic006G041600 Sobic001G207000--Sobic009G044800 Sobic001G207000--Sobic002G045600 Sobic007G105100 Sobic007G105100 Sobic001G207000--Sobic007G105100 Sobic001G207000--Sobic001G194200 Sobic008G118200 Sobic008G118200 Sobic001G207000--Sobic008G118200 Sobic003G195000 Sobic003G195000 Sobic001G207000--Sobic003G195000 Sobic001G207000--Sobic008G089100 Sobic010G123600 Sobic010G123600 Sobic001G207000--Sobic010G123600 Sobic001G080700 Sobic001G080700 Sobic001G392300--Sobic001G080700 Sobic007G061000 Sobic007G061000 Sobic001G392300--Sobic007G061000 Sobic009G177500 Sobic009G177500 Sobic001G392300--Sobic009G177500 Sobic004G353200 Sobic004G353200 Sobic001G392300--Sobic004G353200 Sobic001G007000 Sobic001G007000 Sobic001G392300--Sobic001G007000 Sobic007G075900 Sobic007G075900 Sobic001G392300--Sobic007G075900 Sobic001G392300--Sobic009G044800 Sobic008G047800 Sobic008G047800 Sobic001G392300--Sobic008G047800 Sobic006G200600 Sobic006G200600 Sobic001G392300--Sobic006G200600 Sobic001G540400 Sobic001G540400 Sobic003G408600--Sobic001G540400 Sobic005G008800 Sobic005G008800 Sobic003G408600--Sobic005G008800 Sobic002G397500 Sobic002G397500 Sobic003G408600--Sobic002G397500 Sobic005G112300 Sobic005G112300 Sobic003G408600--Sobic005G112300 Sobic003G408600--Sobic007G163100 Sobic010G112100 Sobic010G112100 Sobic003G408600--Sobic010G112100 Sobic001G058700 Sobic001G058700 Sobic003G408600--Sobic001G058700 Sobic002G071500 Sobic002G071500 Sobic003G408600--Sobic002G071500 Sobic003G408600--Sobic002G045600 Sobic009G191000 Sobic009G191000 Sobic003G313500--Sobic009G191000 Sobic003G313500--Sobic003G422500 Sobic002G411600 Sobic002G411600 Sobic003G313500--Sobic002G411600 Sobic003G313500--Sobic001G540400 Sobic004G034900 Sobic004G034900 Sobic003G313500--Sobic004G034900 Sobic001G289600 Sobic001G289600 Sobic003G313500--Sobic001G289600 Sobic009G053900 Sobic009G053900 Sobic003G313500--Sobic009G053900 Sobic002G008900 Sobic002G008900 Sobic003G313500--Sobic002G008900 Sobic001G365900 Sobic001G365900 Sobic003G313500--Sobic001G365900 Sobic004G291900 Sobic004G291900 Sobic001G194200--Sobic004G291900 Sobic006G055200 Sobic006G055200 Sobic001G194200--Sobic006G055200 Sobic005G001000 Sobic005G001000 Sobic001G194200--Sobic005G001000 Sobic010G010700 Sobic010G010700 Sobic001G194200--Sobic010G010700 Sobic004G276400 Sobic004G276400 Sobic001G194200--Sobic004G276400 Sobic001G289800 Sobic001G289800 Sobic001G194200--Sobic001G289800 Sobic008G001200 Sobic008G001200 Sobic001G194200--Sobic008G001200 Sobic010G206900 Sobic010G206900 Sobic001G194200--Sobic010G206900 Sobic001G194200--Sobic004G034900 Sobic001G268200 Sobic001G268200 Sobic001G390800--Sobic001G268200 Sobic001G121200 Sobic001G121200 Sobic001G390800--Sobic001G121200 Sobic001G390800--Sobic003G313500 Sobic010G205800 Sobic010G205800 Sobic001G390800--Sobic010G205800 Sobic001G085300 Sobic001G085300 Sobic001G390800--Sobic001G085300 Sobic010G147100 Sobic010G147100 Sobic001G390800--Sobic010G147100 Sobic007G075400 Sobic007G075400 Sobic001G390800--Sobic007G075400 Sobic010G139600 Sobic010G139600 Sobic001G390800--Sobic010G139600 Sobic001G050200 Sobic001G050200 Sobic001G390800--Sobic001G050200 Sobic001G534800 Sobic001G534800 Sobic004G135400--Sobic001G534800 Sobic006G208500 Sobic006G208500 Sobic004G135400--Sobic006G208500 Sobic008G099800 Sobic008G099800 Sobic004G135400--Sobic008G099800 Sobic004G277200 Sobic004G277200 Sobic004G135400--Sobic004G277200 Sobic005G003300 Sobic005G003300 Sobic004G135400--Sobic005G003300 Sobic008G004600 Sobic008G004600 Sobic004G135400--Sobic008G004600 Sobic006G126100 Sobic006G126100 Sobic004G135400--Sobic006G126100 Sobic002G042600 Sobic002G042600 Sobic004G135400--Sobic002G042600 Sobic009G245800 Sobic009G245800 Sobic004G135400--Sobic009G245800 Sobic003G164200--Sobic008G118200 Sobic003G164200--Sobic001G392300 Sobic003G164200--Sobic008G089100 Sobic009G088000 Sobic009G088000 Sobic003G164200--Sobic009G088000 Sobic004G039600 Sobic004G039600 Sobic003G164200--Sobic004G039600 Sobic003G164200--Sobic006G041600 Sobic002G133300 Sobic002G133300 Sobic003G164200--Sobic002G133300 Sobic010G275500 Sobic010G275500 Sobic003G164200--Sobic010G275500 Sobic003G164200--Sobic010G112100
Octagon: transcription factors


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