Gene annotation
Transcriptome id Sobic.001G415300.2,Sobic.001G415300.1
Synonym P-glycoprotein, PGP20, SbPGP1, Sb01g039110
Functional annotation "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments" (PubMedID : 20528920)
ABC transporter, ATP-binding protein, putative, expressed
UniProt A0A1Z5SA26 , C5WPA9
Pfam PF00005 PF00664
Panther DB PTHR24222 PTHR24222:SF27
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G55320 : P-glycoprotein 20
RAP-DB (Rice) LOC_Os03g17180.1 : ABC transporter, ATP-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a052730 , Zm00025a052729 , Zm00025a001891
Brachypodium KQK22291 , KQK11813 , PNT77643 , PNT77639 , PNT77636
Barley HORVU4Hr1G058580.8 , HORVU4Hr1G058580.9 , HORVU4Hr1G058580.6 , HORVU4Hr1G058580.7 , HORVU4Hr1G058580.4 , HORVU4Hr1G058580.5 , HORVU4Hr1G058580.2 , HORVU4Hr1G058580.3 , HORVU4Hr1G058580.1 , HORVU4Hr1G058580.18 , HORVU4Hr1G058580.19 , HORVU4Hr1G058580.10 , HORVU4Hr1G058580.11 , HORVU4Hr1G058580.12 , HORVU4Hr1G058580.13 , HORVU4Hr1G058580.14 , HORVU4Hr1G058580.15 , HORVU4Hr1G058580.16 , HORVU4Hr1G058580.17 , HORVU3Hr1G066210.1
Wheat TraesCS4B02G203000 , TraesCS4D02G203900 , TraesCS4D02G203900 , TraesCS4D02G203900 , TraesCS4A02G101600 , TraesCS4A02G101600 , TraesCS4A02G101600
Populus PNT22829 , PNT17816


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G137400 protein binding protein, putative, expressed -
2 Sobic.004G004300 expressed protein -
3 Sobic.001G281100 START domain containing protein, expressed -
4 Sobic.001G085300 phytosulfokine receptor precursor, putative, expressed -
5 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
6 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
8 Sobic.004G002100 G-protein alpha subunit, putative, expressed -
9 Sobic.001G457900 expressed protein -
10 Sobic.010G004100 expressed protein -
11 Sobic.004G344901 - K10357: myosin V
12 Sobic.001G117200 AGC_AGC_other_GWLd.2 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
13 Sobic.004G261600 expressed protein -
14 Sobic.003G331400 expressed protein -
15 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
16 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
17 Sobic.002G031100 resistance protein LR10, putative, expressed -
18 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
19 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5
20 Sobic.008G089100 armadillo/beta-catenin repeat family protein, putative, expressed -


Gene co-expression network
sample Sobic001G415300 Sobic001G415300 Sobic002G137400 Sobic002G137400 Sobic001G415300--Sobic002G137400 Sobic004G004300 Sobic004G004300 Sobic001G415300--Sobic004G004300 Sobic001G281100 Sobic001G281100 Sobic001G415300--Sobic001G281100 Sobic001G085300 Sobic001G085300 Sobic001G415300--Sobic001G085300 Sobic003G337300 Sobic003G337300 Sobic001G415300--Sobic003G337300 Sobic006G126100 Sobic006G126100 Sobic001G415300--Sobic006G126100 Sobic001G534800 Sobic001G534800 Sobic001G415300--Sobic001G534800 Sobic004G002100 Sobic004G002100 Sobic001G415300--Sobic004G002100 Sobic001G457900 Sobic001G457900 Sobic001G415300--Sobic001G457900 Sobic002G137400--Sobic001G415300 Sobic002G137400--Sobic004G002100 Sobic010G004100 Sobic010G004100 Sobic002G137400--Sobic010G004100 Sobic002G137400--Sobic003G337300 Sobic003G331400 Sobic003G331400 Sobic002G137400--Sobic003G331400 Sobic002G137400--Sobic001G281100 Sobic002G137400--Sobic004G004300 Sobic002G137400--Sobic001G534800 Sobic002G031100 Sobic002G031100 Sobic002G137400--Sobic002G031100 Sobic004G004300--Sobic001G281100 Sobic005G026200 Sobic005G026200 Sobic004G004300--Sobic005G026200 Sobic004G004300--Sobic001G534800 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic004G004300--Sobic001G415300 Sobic010G275500 Sobic010G275500 Sobic004G004300--Sobic010G275500 Sobic005G003300 Sobic005G003300 Sobic004G004300--Sobic005G003300 Sobic001G281100--Sobic001G534800 Sobic001G281100--Sobic004G004300 Sobic001G065000 Sobic001G065000 Sobic001G281100--Sobic001G065000 Sobic001G281100--Sobic005G026200 Sobic008G099800 Sobic008G099800 Sobic001G281100--Sobic008G099800 Sobic003G229500 Sobic003G229500 Sobic001G281100--Sobic003G229500 Sobic006G012500 Sobic006G012500 Sobic001G281100--Sobic006G012500 Sobic004G072100 Sobic004G072100 Sobic001G281100--Sobic004G072100 Sobic001G281100--Sobic010G275500 Sobic001G390800 Sobic001G390800 Sobic001G085300--Sobic001G390800 Sobic003G313500 Sobic003G313500 Sobic001G085300--Sobic003G313500 Sobic001G085300--Sobic001G117200 Sobic003G110000 Sobic003G110000 Sobic001G085300--Sobic003G110000 Sobic003G422500 Sobic003G422500 Sobic001G085300--Sobic003G422500 Sobic001G085300--Sobic001G415300 Sobic010G139600 Sobic010G139600 Sobic001G085300--Sobic010G139600 Sobic003G196300 Sobic003G196300 Sobic001G085300--Sobic003G196300 Sobic001G268200 Sobic001G268200 Sobic001G085300--Sobic001G268200 Sobic003G104000 Sobic003G104000 Sobic003G337300--Sobic003G104000 Sobic003G337300--Sobic010G004100 Sobic003G337300--Sobic002G137400 Sobic004G039600 Sobic004G039600 Sobic003G337300--Sobic004G039600 Sobic006G131000 Sobic006G131000 Sobic003G337300--Sobic006G131000 Sobic004G344901 Sobic004G344901 Sobic003G337300--Sobic004G344901 Sobic004G322400 Sobic004G322400 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic003G337300--Sobic001G415300 Sobic006G126100--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic006G126100--Sobic001G534800 Sobic006G126100--Sobic003G104000 Sobic006G126100--Sobic006G012500 Sobic004G135400 Sobic004G135400 Sobic006G126100--Sobic004G135400 Sobic007G132100 Sobic007G132100 Sobic006G126100--Sobic007G132100 Sobic006G208500 Sobic006G208500 Sobic006G126100--Sobic006G208500 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic001G534800--Sobic004G004300 Sobic001G534800--Sobic004G135400 Sobic001G534800--Sobic005G003300 Sobic001G534800--Sobic005G026200 Sobic001G534800--Sobic006G012500 Sobic004G113400 Sobic004G113400 Sobic001G534800--Sobic004G113400 Sobic001G534800--Sobic001G065000 Sobic004G002100--Sobic002G137400 Sobic004G002100--Sobic001G534800 Sobic004G002100--Sobic002G031100 Sobic004G002100--Sobic001G415300 Sobic004G002100--Sobic001G281100 Sobic004G002400 Sobic004G002400 Sobic004G002100--Sobic004G002400 Sobic001G413900 Sobic001G413900 Sobic004G002100--Sobic001G413900 Sobic004G002100--Sobic006G126100 Sobic004G002100--Sobic004G004300 Sobic002G133300 Sobic002G133300 Sobic001G457900--Sobic002G133300 Sobic001G457900--Sobic003G196300 Sobic001G457900--Sobic001G117200 Sobic008G092600 Sobic008G092600 Sobic001G457900--Sobic008G092600 Sobic001G273700 Sobic001G273700 Sobic001G457900--Sobic001G273700 Sobic003G072200 Sobic003G072200 Sobic001G457900--Sobic003G072200 Sobic003G428100 Sobic003G428100 Sobic001G457900--Sobic003G428100 Sobic001G196500 Sobic001G196500 Sobic001G457900--Sobic001G196500 Sobic001G457900--Sobic003G229500
Octagon: transcription factors


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