Gene annotation
Transcriptome id Sobic.005G003300.1
Synonym
Functional annotation clathrin heavy chain, putative, expressed
UniProt C5Y2Y8
Pfam PF09268 PF13838 PF01394 PF00637
Panther DB PTHR10292 PTHR10292:SF10
NCBI CDD -
KEGG Orthology K04646; clathrin heavy chain
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT3G11130 : Clathrin, heavy chain
RAP-DB (Rice) LOC_Os11g01380.1 : clathrin heavy chain, putative, expressed
MaizeGDB (Corn) Zm00025a047595 , Zm00025a056768 , Zm00025a053658 , Zm00025a033266 , Zm00025a038247 , Zm00025a003048 , Zm00025a056919 , Zm00025a014141 , Zm00025a030363 , Zm00025a013219 , Zm00025a051945 , Zm00025a028932
Brachypodium KQK12310 , PNT65599 , PNT65598 , PNT65600 , KQJ92642 , KQJ89631 , PNT64183 , PNT64182 , PNT64185 , PNT64184 , PNT64186
Barley HORVU4Hr1G024710.18 , HORVU4Hr1G024710.19 , HORVU4Hr1G024710.12 , HORVU4Hr1G024710.13 , HORVU4Hr1G024710.10 , HORVU4Hr1G024710.11 , HORVU4Hr1G024710.16 , HORVU4Hr1G024710.17 , HORVU4Hr1G024710.14 , HORVU4Hr1G024710.15 , HORVU4Hr1G024710.1 , HORVU4Hr1G024710.2 , HORVU4Hr1G024710.3 , HORVU4Hr1G024710.4 , HORVU4Hr1G024710.5 , HORVU4Hr1G024710.6 , HORVU4Hr1G024710.7 , HORVU4Hr1G024710.8 , HORVU4Hr1G024710.9 , HORVU5Hr1G048010.13 , HORVU5Hr1G048010.10 , HORVU5Hr1G048010.11 , HORVU5Hr1G048010.16 , HORVU5Hr1G048010.17 , HORVU5Hr1G048010.14 , HORVU5Hr1G048010.15 , HORVU5Hr1G048010.1 , HORVU5Hr1G048010.2 , HORVU5Hr1G048010.3 , HORVU5Hr1G048010.4 , HORVU5Hr1G048010.5 , HORVU5Hr1G048010.6 , HORVU5Hr1G048010.7 , HORVU5Hr1G048010.8 , HORVU5Hr1G048010.9 , HORVU4Hr1G024710.20
Wheat TraesCS4A02G182300 , TraesCS5A02G153500 , TraesCS4D02G130900 , TraesCS4B02G136100 , TraesCS4B02G136100 , TraesCS4B02G136100 , TraesCS5B02G152300 , TraesCS5D02G158800
Populus PNT17338 , PNT17339 , PNT57060 , PNT57061 , PNT23233 , PNT57059 , PNT57058 , PNT20105 , PNT20104


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
2 Sobic.005G026200 HEAT repeat family protein, putative, expressed K11886: proteasome component ECM29
3 Sobic.004G135400 expressed protein -
4 Sobic.004G004300 expressed protein -
5 Sobic.008G004600 ubiquitin-activating enzyme, putative, expressed K03178: UBE1, ubiquitin-activating enzyme E1
6 Sobic.006G126100 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
7 Sobic.008G003700 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
8 Sobic.008G099800 expressed protein -
9 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
10 Sobic.001G281100 START domain containing protein, expressed -
11 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
12 Sobic.001G347500 expressed protein -
13 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
14 Sobic.006G012500 protein transport protein Sec24-like, putative, expressed K14007: protein transport protein SEC24
15 Sobic.008G098900 ubiquitin carboxyl-terminal hydrolase, putative, expressed K11838: USP7, ubiquitin carboxyl-terminal hydrolase 7
16 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
17 Sobic.004G113400 cyclic nucleotide-gated ion channel 1, putative, expressed K05391: cyclic nucleotide gated channel, plant
18 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
19 Sobic.010G232600 solute carrier family 35 member F5, putative, expressed K15289: solute carrier family 35, member F5
20 Sobic.001G287500 heat shock protein DnaJ, putative, expressed K09533: DnaJ homolog subfamily C member 13


Gene co-expression network
sample Sobic005G003300 Sobic005G003300 Sobic001G534800 Sobic001G534800 Sobic005G003300--Sobic001G534800 Sobic005G026200 Sobic005G026200 Sobic005G003300--Sobic005G026200 Sobic004G135400 Sobic004G135400 Sobic005G003300--Sobic004G135400 Sobic004G004300 Sobic004G004300 Sobic005G003300--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic005G003300--Sobic008G004600 Sobic006G126100 Sobic006G126100 Sobic005G003300--Sobic006G126100 Sobic008G003700 Sobic008G003700 Sobic005G003300--Sobic008G003700 Sobic008G099800 Sobic008G099800 Sobic005G003300--Sobic008G099800 Sobic004G039600 Sobic004G039600 Sobic005G003300--Sobic004G039600 Sobic001G281100 Sobic001G281100 Sobic001G534800--Sobic001G281100 Sobic001G534800--Sobic008G099800 Sobic001G534800--Sobic004G004300 Sobic001G534800--Sobic004G135400 Sobic001G534800--Sobic005G003300 Sobic001G534800--Sobic005G026200 Sobic006G012500 Sobic006G012500 Sobic001G534800--Sobic006G012500 Sobic004G113400 Sobic004G113400 Sobic001G534800--Sobic004G113400 Sobic001G065000 Sobic001G065000 Sobic001G534800--Sobic001G065000 Sobic005G026200--Sobic004G004300 Sobic005G026200--Sobic001G534800 Sobic005G026200--Sobic001G281100 Sobic005G026200--Sobic005G003300 Sobic002G397500 Sobic002G397500 Sobic005G026200--Sobic002G397500 Sobic010G053800 Sobic010G053800 Sobic005G026200--Sobic010G053800 Sobic003G072200 Sobic003G072200 Sobic005G026200--Sobic003G072200 Sobic005G026200--Sobic001G065000 Sobic005G026200--Sobic004G113400 Sobic004G135400--Sobic001G534800 Sobic006G208500 Sobic006G208500 Sobic004G135400--Sobic006G208500 Sobic004G135400--Sobic008G099800 Sobic004G277200 Sobic004G277200 Sobic004G135400--Sobic004G277200 Sobic004G135400--Sobic005G003300 Sobic004G135400--Sobic008G004600 Sobic004G135400--Sobic006G126100 Sobic002G042600 Sobic002G042600 Sobic004G135400--Sobic002G042600 Sobic009G245800 Sobic009G245800 Sobic004G135400--Sobic009G245800 Sobic004G004300--Sobic001G281100 Sobic004G004300--Sobic005G026200 Sobic004G004300--Sobic001G534800 Sobic004G004300--Sobic006G126100 Sobic001G117200 Sobic001G117200 Sobic004G004300--Sobic001G117200 Sobic004G004200 Sobic004G004200 Sobic004G004300--Sobic004G004200 Sobic001G415300 Sobic001G415300 Sobic004G004300--Sobic001G415300 Sobic010G275500 Sobic010G275500 Sobic004G004300--Sobic010G275500 Sobic004G004300--Sobic005G003300 Sobic008G004600--Sobic006G126100 Sobic006G136400 Sobic006G136400 Sobic008G004600--Sobic006G136400 Sobic008G004600--Sobic004G135400 Sobic008G004600--Sobic005G003300 Sobic010G205800 Sobic010G205800 Sobic008G004600--Sobic010G205800 Sobic008G004600--Sobic006G208500 Sobic008G004600--Sobic004G039600 Sobic001G007000 Sobic001G007000 Sobic008G004600--Sobic001G007000 Sobic002G359400 Sobic002G359400 Sobic008G004600--Sobic002G359400 Sobic006G126100--Sobic004G004300 Sobic006G126100--Sobic008G004600 Sobic006G126100--Sobic004G039600 Sobic006G126100--Sobic001G534800 Sobic003G104000 Sobic003G104000 Sobic006G126100--Sobic003G104000 Sobic006G126100--Sobic006G012500 Sobic006G126100--Sobic004G135400 Sobic007G132100 Sobic007G132100 Sobic006G126100--Sobic007G132100 Sobic006G126100--Sobic006G208500 Sobic008G003700--Sobic005G003300 Sobic004G344901 Sobic004G344901 Sobic008G003700--Sobic004G344901 Sobic007G075500 Sobic007G075500 Sobic008G003700--Sobic007G075500 Sobic001G404600 Sobic001G404600 Sobic008G003700--Sobic001G404600 Sobic008G124800 Sobic008G124800 Sobic008G003700--Sobic008G124800 Sobic003G029600 Sobic003G029600 Sobic008G003700--Sobic003G029600 Sobic003G337300 Sobic003G337300 Sobic008G003700--Sobic003G337300 Sobic004G261600 Sobic004G261600 Sobic008G003700--Sobic004G261600 Sobic007G054800 Sobic007G054800 Sobic008G003700--Sobic007G054800 Sobic008G099800--Sobic006G012500 Sobic008G099800--Sobic001G534800 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic008G099800--Sobic001G281100 Sobic008G099800--Sobic004G113400 Sobic008G099800--Sobic004G039600 Sobic008G099800--Sobic003G072200 Sobic008G099800--Sobic001G065000 Sobic004G039600--Sobic006G012500 Sobic001G369000 Sobic001G369000 Sobic004G039600--Sobic001G369000 Sobic004G039600--Sobic007G132100 Sobic004G039600--Sobic008G099800 Sobic004G039600--Sobic006G126100 Sobic004G039600--Sobic010G053800 Sobic006G131000 Sobic006G131000 Sobic004G039600--Sobic006G131000 Sobic004G039600--Sobic001G534800 Sobic007G120500 Sobic007G120500 Sobic004G039600--Sobic007G120500
Octagon: transcription factors


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