Gene annotation
Transcriptome id Sobic.008G003700.1
Synonym
Functional annotation clathrin heavy chain, putative, expressed
UniProt A0A1B6PAV5
Pfam PF09268 PF13838 PF01394 PF00637
Panther DB PTHR10292 PTHR10292:SF10
NCBI CDD -
KEGG Orthology K04646; clathrin heavy chain
Gene Ontology GO:0016192; vesicle-mediated transport GO:0006886intracellular protein transport GO:0005198structural molecule activity


Orthologs (automatic annotation)
TAIR AT3G11130 : Clathrin, heavy chain
RAP-DB (Rice) LOC_Os11g01380.1 : clathrin heavy chain, putative, expressed
MaizeGDB (Corn) Zm00025a047595 , Zm00025a056768 , Zm00025a053658 , Zm00025a033266 , Zm00025a038247 , Zm00025a003048 , Zm00025a056919 , Zm00025a014141 , Zm00025a030363 , Zm00025a013219 , Zm00025a051945 , Zm00025a028932
Brachypodium PNT65599 , PNT65598 , PNT65600 , KQJ92642 , KQJ89631 , PNT64183 , PNT64182 , PNT64185 , PNT64184 , PNT64186
Barley HORVU4Hr1G024710.18 , HORVU4Hr1G024710.19 , HORVU4Hr1G024710.12 , HORVU4Hr1G024710.13 , HORVU4Hr1G024710.10 , HORVU4Hr1G024710.11 , HORVU4Hr1G024710.16 , HORVU4Hr1G024710.17 , HORVU4Hr1G024710.14 , HORVU4Hr1G024710.15 , HORVU4Hr1G024710.1 , HORVU4Hr1G024710.2 , HORVU4Hr1G024710.3 , HORVU4Hr1G024710.4 , HORVU4Hr1G024710.5 , HORVU4Hr1G024710.6 , HORVU4Hr1G024710.7 , HORVU4Hr1G024710.8 , HORVU4Hr1G024710.9 , HORVU5Hr1G048010.13 , HORVU5Hr1G048010.10 , HORVU5Hr1G048010.11 , HORVU5Hr1G048010.16 , HORVU5Hr1G048010.17 , HORVU5Hr1G048010.14 , HORVU5Hr1G048010.15 , HORVU5Hr1G048010.1 , HORVU5Hr1G048010.2 , HORVU5Hr1G048010.3 , HORVU5Hr1G048010.4 , HORVU5Hr1G048010.5 , HORVU5Hr1G048010.6 , HORVU5Hr1G048010.7 , HORVU5Hr1G048010.8 , HORVU5Hr1G048010.9 , HORVU4Hr1G024710.21 , HORVU4Hr1G024710.20
Wheat TraesCS4A02G182300 , TraesCS5A02G153500 , TraesCS4D02G130900 , TraesCS4B02G136100 , TraesCS4B02G136100 , TraesCS4B02G136100 , TraesCS5B02G152300 , TraesCS5D02G158800
Populus PNT57060 , PNT57061 , PNT23233 , PNT57059 , PNT57058 , PNT20105 , PNT20104


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cDNA sequences
Sobic.008G003700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
2 Sobic.004G344901 - K10357: myosin V
3 Sobic.007G075500 UDP-glucose Pyrophosphorylase(PubMedID : 26616172)@UTP--glucose-1-phosphate uridylyltransferase, putative, expressed K00972: UDP-N-acetylglucosamine/UDP-N-acetylgalactosamine diphosphorylase
4 Sobic.001G404600 expressed protein K18270: Rab3 GTPase-activating protein catalytic subunit
5 Sobic.008G124800 expressed protein -
6 Sobic.003G029600 coatomer alpha subunit, putative, expressed K05236: COPA, coatomer subunit alpha
7 Sobic.003G337300 HEAT repeat family protein, putative, expressed K08876: SCY1-like protein 1
8 Sobic.004G261600 expressed protein -
9 Sobic.007G054800 valyl-tRNA synthetase, putative, expressed K01873: VARS, valyl-tRNA synthetase
10 Sobic.004G004300 expressed protein -
11 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
12 Sobic.001G415300 "domain confirmed by Pfam database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@ABC transporter, ATP-binding protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
13 Sobic.006G260500 expressed protein -
14 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
15 Sobic.006G280000 transportin-2, putative, expressed K18752: TNPO1, IPO2, transportin-1
16 Sobic.003G209200 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed K04354: serine/threonine-protein phosphatase 2A regulatory subunit B
17 Sobic.001G534800 Putative ortholog gene associated with awn presence/absence in wheat(PubMedID : 25237112)@adapitin protein, putative, expressed K11824: AP-2 complex subunit alpha
18 Sobic.003G331400 expressed protein -
19 Sobic.006G021700 expressed protein K17600: vacuolar protein sorting-associated protein 54
20 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3


Gene co-expression network
sample Sobic008G003700 Sobic008G003700 Sobic005G003300 Sobic005G003300 Sobic008G003700--Sobic005G003300 Sobic004G344901 Sobic004G344901 Sobic008G003700--Sobic004G344901 Sobic007G075500 Sobic007G075500 Sobic008G003700--Sobic007G075500 Sobic001G404600 Sobic001G404600 Sobic008G003700--Sobic001G404600 Sobic008G124800 Sobic008G124800 Sobic008G003700--Sobic008G124800 Sobic003G029600 Sobic003G029600 Sobic008G003700--Sobic003G029600 Sobic003G337300 Sobic003G337300 Sobic008G003700--Sobic003G337300 Sobic004G261600 Sobic004G261600 Sobic008G003700--Sobic004G261600 Sobic007G054800 Sobic007G054800 Sobic008G003700--Sobic007G054800 Sobic001G534800 Sobic001G534800 Sobic005G003300--Sobic001G534800 Sobic005G026200 Sobic005G026200 Sobic005G003300--Sobic005G026200 Sobic004G135400 Sobic004G135400 Sobic005G003300--Sobic004G135400 Sobic004G004300 Sobic004G004300 Sobic005G003300--Sobic004G004300 Sobic008G004600 Sobic008G004600 Sobic005G003300--Sobic008G004600 Sobic006G126100 Sobic006G126100 Sobic005G003300--Sobic006G126100 Sobic005G003300--Sobic008G003700 Sobic008G099800 Sobic008G099800 Sobic005G003300--Sobic008G099800 Sobic004G039600 Sobic004G039600 Sobic005G003300--Sobic004G039600 Sobic003G331400 Sobic003G331400 Sobic004G344901--Sobic003G331400 Sobic004G344901--Sobic003G337300 Sobic001G163400 Sobic001G163400 Sobic004G344901--Sobic001G163400 Sobic006G131000 Sobic006G131000 Sobic004G344901--Sobic006G131000 Sobic004G344901--Sobic004G004300 Sobic001G415300 Sobic001G415300 Sobic004G344901--Sobic001G415300 Sobic004G344901--Sobic008G003700 Sobic001G281100 Sobic001G281100 Sobic004G344901--Sobic001G281100 Sobic002G137400 Sobic002G137400 Sobic004G344901--Sobic002G137400 Sobic006G260500 Sobic006G260500 Sobic007G075500--Sobic006G260500 Sobic010G223300 Sobic010G223300 Sobic007G075500--Sobic010G223300 Sobic002G008800 Sobic002G008800 Sobic007G075500--Sobic002G008800 Sobic007G075500--Sobic008G003700 Sobic004G241900 Sobic004G241900 Sobic007G075500--Sobic004G241900 Sobic003G087000 Sobic003G087000 Sobic007G075500--Sobic003G087000 Sobic003G338500 Sobic003G338500 Sobic007G075500--Sobic003G338500 Sobic007G075500--Sobic004G261600 Sobic002G020700 Sobic002G020700 Sobic007G075500--Sobic002G020700 Sobic001G404600--Sobic008G124800 Sobic003G233400 Sobic003G233400 Sobic001G404600--Sobic003G233400 Sobic002G308500 Sobic002G308500 Sobic001G404600--Sobic002G308500 Sobic001G287500 Sobic001G287500 Sobic001G404600--Sobic001G287500 Sobic001G404600--Sobic002G020700 Sobic009G084900 Sobic009G084900 Sobic001G404600--Sobic009G084900 Sobic004G322400 Sobic004G322400 Sobic001G404600--Sobic004G322400 Sobic006G021700 Sobic006G021700 Sobic001G404600--Sobic006G021700 Sobic001G301200 Sobic001G301200 Sobic001G404600--Sobic001G301200 Sobic002G340900 Sobic002G340900 Sobic008G124800--Sobic002G340900 Sobic008G124800--Sobic006G021700 Sobic007G019300 Sobic007G019300 Sobic008G124800--Sobic007G019300 Sobic008G124800--Sobic004G322400 Sobic008G124800--Sobic001G404600 Sobic008G124800--Sobic003G233400 Sobic008G124800--Sobic002G308500 Sobic003G405500 Sobic003G405500 Sobic008G124800--Sobic003G405500 Sobic002G401500 Sobic002G401500 Sobic008G124800--Sobic002G401500 Sobic001G117800 Sobic001G117800 Sobic003G029600--Sobic001G117800 Sobic003G314700 Sobic003G314700 Sobic003G029600--Sobic003G314700 Sobic002G070600 Sobic002G070600 Sobic003G029600--Sobic002G070600 Sobic003G029600--Sobic002G340900 Sobic003G029600--Sobic001G301200 Sobic001G449900 Sobic001G449900 Sobic003G029600--Sobic001G449900 Sobic003G029600--Sobic008G124800 Sobic009G118900 Sobic009G118900 Sobic003G029600--Sobic009G118900 Sobic001G437400 Sobic001G437400 Sobic003G029600--Sobic001G437400 Sobic003G104000 Sobic003G104000 Sobic003G337300--Sobic003G104000 Sobic010G004100 Sobic010G004100 Sobic003G337300--Sobic010G004100 Sobic003G337300--Sobic002G137400 Sobic003G337300--Sobic004G039600 Sobic003G337300--Sobic006G131000 Sobic003G337300--Sobic004G344901 Sobic003G337300--Sobic004G322400 Sobic003G332500 Sobic003G332500 Sobic003G337300--Sobic003G332500 Sobic003G337300--Sobic001G415300 Sobic004G228800 Sobic004G228800 Sobic004G261600--Sobic004G228800 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic001G251200 Sobic001G251200 Sobic004G261600--Sobic001G251200 Sobic004G261600--Sobic001G415300 Sobic004G261600--Sobic004G004300 Sobic004G261600--Sobic008G099800 Sobic003G221400 Sobic003G221400 Sobic007G054800--Sobic003G221400 Sobic001G110600 Sobic001G110600 Sobic007G054800--Sobic001G110600 Sobic001G004400 Sobic001G004400 Sobic007G054800--Sobic001G004400 Sobic005G162500 Sobic005G162500 Sobic007G054800--Sobic005G162500 Sobic006G280000 Sobic006G280000 Sobic007G054800--Sobic006G280000 Sobic002G256700 Sobic002G256700 Sobic007G054800--Sobic002G256700 Sobic002G133300 Sobic002G133300 Sobic007G054800--Sobic002G133300 Sobic002G142900 Sobic002G142900 Sobic007G054800--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic007G054800--Sobic004G131300
Octagon: transcription factors


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