Gene annotation
Transcriptome id Sobic.006G034500.1
Synonym Sb06g004300
Functional annotation elongation factor Tu, putative, expressed
UniProt C5YDD4
Pfam PF03144 PF03143 PF00009
Panther DB PTHR23115 PTHR23115:SF133
NCBI CDD -
KEGG Orthology K03267; ERF3, peptide chain release factor subunit 3
Gene Ontology GO:0005525; GTP binding


Orthologs (automatic annotation)
TAIR AT1G18070 : Translation elongation factor EF1A/initiation factor IF2gamma family protein
RAP-DB (Rice) LOC_Os04g20220.1 : elongation factor Tu, putative, expressed
MaizeGDB (Corn) Zm00025a055712 , Zm00025a012040
Brachypodium KQJ94650 , KQJ94651 , KQJ82052 , KQJ82051 , PNT66458 , KQJ94649
Barley HORVU2Hr1G012860.1 , HORVU2Hr1G012860.3 , HORVU2Hr1G012860.2 , HORVU2Hr1G012860.5 , HORVU2Hr1G012860.4 , HORVU2Hr1G012860.6
Wheat TraesCS2A02G076700 , TraesCS2B02G091600 , TraesCS2D02G075300 , TraesCS2D02G075300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G145000 importin-8, putative, expressed -
2 Sobic.001G440800 myb/SANT domain protein, putative, expressed -
3 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
4 Sobic.002G256700 ubiquitin carboxyl-terminal hydrolase family protein, expressed K11844: ubiquitin carboxyl-terminal hydrolase 16/45
5 Sobic.009G201700 oligosaccharyl transferase, putative, expressed K07151: dolichyl-diphosphooligosaccharide---protein glycosyltransferase
6 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
7 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
8 Sobic.004G088501 - K17302: COPB2, coatomer subunit beta'
9 Sobic.004G261600 expressed protein -
10 Sobic.004G241900 OsDegp3 - Putative Deg protease homologue, expressed -
11 Sobic.004G277200 GPI transamidase subunit PIG-U domain containing protein, expressed K05293: GPI-anchor transamidase subunit U
12 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
13 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
14 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
15 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
16 Sobic.009G056200 arginyl-tRNA synthetase, putative, expressed K01887: RARS, arginyl-tRNA synthetase
17 Sobic.005G003300 clathrin heavy chain, putative, expressed K04646: clathrin heavy chain
18 Sobic.008G124900 heat shock protein DnaJ, putative, expressed -
19 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
20 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3


Gene co-expression network
sample Sobic006G034500 Sobic006G034500 Sobic004G145000 Sobic004G145000 Sobic006G034500--Sobic004G145000 Sobic001G440800 Sobic001G440800 Sobic006G034500--Sobic001G440800 Sobic003G104000 Sobic003G104000 Sobic006G034500--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic006G034500--Sobic002G256700 Sobic009G201700 Sobic009G201700 Sobic006G034500--Sobic009G201700 Sobic008G055900 Sobic008G055900 Sobic006G034500--Sobic008G055900 Sobic002G142900 Sobic002G142900 Sobic006G034500--Sobic002G142900 Sobic004G088501 Sobic004G088501 Sobic006G034500--Sobic004G088501 Sobic004G261600 Sobic004G261600 Sobic006G034500--Sobic004G261600 Sobic006G139100 Sobic006G139100 Sobic004G145000--Sobic006G139100 Sobic004G340400 Sobic004G340400 Sobic004G145000--Sobic004G340400 Sobic004G145000--Sobic006G034500 Sobic001G447300 Sobic001G447300 Sobic004G145000--Sobic001G447300 Sobic001G455800 Sobic001G455800 Sobic004G145000--Sobic001G455800 Sobic004G145000--Sobic002G256700 Sobic003G036400 Sobic003G036400 Sobic004G145000--Sobic003G036400 Sobic004G145000--Sobic003G104000 Sobic006G166200 Sobic006G166200 Sobic004G145000--Sobic006G166200 Sobic001G440800--Sobic002G142900 Sobic001G440800--Sobic006G034500 Sobic005G062200 Sobic005G062200 Sobic001G440800--Sobic005G062200 Sobic001G440800--Sobic003G104000 Sobic001G440800--Sobic008G055900 Sobic002G401500 Sobic002G401500 Sobic001G440800--Sobic002G401500 Sobic006G260500 Sobic006G260500 Sobic001G440800--Sobic006G260500 Sobic008G088872 Sobic008G088872 Sobic001G440800--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic001G440800--Sobic001G263600 Sobic003G337300 Sobic003G337300 Sobic003G104000--Sobic003G337300 Sobic003G104000--Sobic002G256700 Sobic006G126100 Sobic006G126100 Sobic003G104000--Sobic006G126100 Sobic001G251100 Sobic001G251100 Sobic003G104000--Sobic001G251100 Sobic003G104000--Sobic002G142900 Sobic002G295500 Sobic002G295500 Sobic003G104000--Sobic002G295500 Sobic004G277200 Sobic004G277200 Sobic003G104000--Sobic004G277200 Sobic004G131300 Sobic004G131300 Sobic003G104000--Sobic004G131300 Sobic006G261400 Sobic006G261400 Sobic003G104000--Sobic006G261400 Sobic002G256700--Sobic003G104000 Sobic001G493700 Sobic001G493700 Sobic002G256700--Sobic001G493700 Sobic007G054800 Sobic007G054800 Sobic002G256700--Sobic007G054800 Sobic002G256700--Sobic001G251100 Sobic002G256700--Sobic002G142900 Sobic002G256700--Sobic004G131300 Sobic006G280000 Sobic006G280000 Sobic002G256700--Sobic006G280000 Sobic002G133300 Sobic002G133300 Sobic002G256700--Sobic002G133300 Sobic001G117200 Sobic001G117200 Sobic002G256700--Sobic001G117200 Sobic009G131300 Sobic009G131300 Sobic009G201700--Sobic009G131300 Sobic009G201700--Sobic007G054800 Sobic006G103200 Sobic006G103200 Sobic009G201700--Sobic006G103200 Sobic004G030900 Sobic004G030900 Sobic009G201700--Sobic004G030900 Sobic009G201700--Sobic004G277200 Sobic010G059500 Sobic010G059500 Sobic009G201700--Sobic010G059500 Sobic009G201700--Sobic006G166200 Sobic009G084900 Sobic009G084900 Sobic009G201700--Sobic009G084900 Sobic002G429300 Sobic002G429300 Sobic009G201700--Sobic002G429300 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic010G223300 Sobic010G223300 Sobic008G055900--Sobic010G223300 Sobic008G103300 Sobic008G103300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic006G136400 Sobic006G136400 Sobic008G055900--Sobic006G136400 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic002G142900--Sobic004G131300 Sobic002G142900--Sobic001G263600 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic002G142900--Sobic007G054800 Sobic005G162500 Sobic005G162500 Sobic002G142900--Sobic005G162500 Sobic002G142900--Sobic003G104000 Sobic002G142900--Sobic002G256700 Sobic002G335600 Sobic002G335600 Sobic002G142900--Sobic002G335600 Sobic004G088450 Sobic004G088450 Sobic004G088501--Sobic004G088450 Sobic009G126300 Sobic009G126300 Sobic004G088501--Sobic009G126300 Sobic004G088501--Sobic003G337300 Sobic004G178300 Sobic004G178300 Sobic004G088501--Sobic004G178300 Sobic004G088501--Sobic006G034500 Sobic004G088501--Sobic001G493700 Sobic006G131000 Sobic006G131000 Sobic004G088501--Sobic006G131000 Sobic001G281100 Sobic001G281100 Sobic004G088501--Sobic001G281100 Sobic004G322400 Sobic004G322400 Sobic004G088501--Sobic004G322400 Sobic004G228800 Sobic004G228800 Sobic004G261600--Sobic004G228800 Sobic004G261600--Sobic006G126100 Sobic003G209200 Sobic003G209200 Sobic004G261600--Sobic003G209200 Sobic004G261600--Sobic003G104000 Sobic007G005500 Sobic007G005500 Sobic004G261600--Sobic007G005500 Sobic001G251200 Sobic001G251200 Sobic004G261600--Sobic001G251200 Sobic001G415300 Sobic001G415300 Sobic004G261600--Sobic001G415300 Sobic004G004300 Sobic004G004300 Sobic004G261600--Sobic004G004300 Sobic008G099800 Sobic008G099800 Sobic004G261600--Sobic008G099800
Octagon: transcription factors


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