Gene annotation
Transcriptome id Sobic.003G036400.1
Synonym TIF3A1, Sb03g003250, EIF3A-1, EIF3A, ATTIF3A1, ATEIF3A-1
Functional annotation -
UniProt C5XM02
Pfam PF01399
Panther DB PTHR14005
NCBI CDD -
KEGG Orthology K03254; translation initiation factor 3 subunit A
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT4G11420 : eukaryotic translation initiation factor 3A
RAP-DB (Rice) LOC_Os01g03070.2 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a035780 , Zm00025a023066
Brachypodium KQK02456
Barley HORVU7Hr1G016130.6 , HORVU7Hr1G016130.7 , HORVU7Hr1G016130.4 , HORVU7Hr1G016130.5 , HORVU7Hr1G016130.2 , HORVU7Hr1G016130.3 , HORVU7Hr1G016130.1 , HORVU7Hr1G016130.8 , HORVU7Hr1G016130.9 , HORVU7Hr1G016130.10 , HORVU7Hr1G016130.11
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G235200 PPR repeat domain containing protein, putative, expressed -
2 Sobic.004G145000 importin-8, putative, expressed -
3 Sobic.004G320500 expressed protein K14794: ribosomal RNA-processing protein 12
4 Sobic.001G447300 ATP-binding cassette sub-family E member 1, putative, expressed K06174: ABCE1, ATP-binding cassette, sub-family E, member 1
5 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
6 Sobic.003G006400 metallo-beta-lactamase family protein, putative, expressed K00784: ribonuclease Z
7 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
8 Sobic.005G062200 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
9 Sobic.003G093800 - K03254: translation initiation factor 3 subunit A
10 Sobic.006G077200 ubiquitin interaction motif-containing protein, putative, expressed -
11 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2
12 Sobic.003G104000 expressed protein K15133: mediator of RNA polymerase II transcription subunit 17
13 Sobic.006G086600 IKI3 family protein, expressed K11373: ELP1, IKI3, elongator complex protein 1
14 Sobic.006G034500 elongation factor Tu, putative, expressed K03267: ERF3, peptide chain release factor subunit 3
15 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein
16 Sobic.001G099900 WD domain, G-beta repeat domain containing protein, expressed K14548: UTP4, U3 small nucleolar RNA-associated protein 4
17 Sobic.010G007100 AAA family ATPase, putative, expressed K14571: RIX7, ribosome biogenesis ATPase
18 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
19 Sobic.009G249700 expressed protein -
20 Sobic.009G158100 calcium-binding mitochondrial protein anon-60Da, putative, expressed K17800: LETM1, LETM1 and EF-hand domain-containing protein 1, mitochondrial


Gene co-expression network
sample Sobic003G036400 Sobic003G036400 Sobic002G235200 Sobic002G235200 Sobic003G036400--Sobic002G235200 Sobic004G145000 Sobic004G145000 Sobic003G036400--Sobic004G145000 Sobic004G320500 Sobic004G320500 Sobic003G036400--Sobic004G320500 Sobic001G447300 Sobic001G447300 Sobic003G036400--Sobic001G447300 Sobic002G150700 Sobic002G150700 Sobic003G036400--Sobic002G150700 Sobic003G006400 Sobic003G006400 Sobic003G036400--Sobic003G006400 Sobic001G145400 Sobic001G145400 Sobic003G036400--Sobic001G145400 Sobic005G062200 Sobic005G062200 Sobic003G036400--Sobic005G062200 Sobic003G093800 Sobic003G093800 Sobic003G036400--Sobic003G093800 Sobic006G086600 Sobic006G086600 Sobic002G235200--Sobic006G086600 Sobic001G089600 Sobic001G089600 Sobic002G235200--Sobic001G089600 Sobic002G235200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic002G235200--Sobic010G059500 Sobic003G146600 Sobic003G146600 Sobic002G235200--Sobic003G146600 Sobic006G166200 Sobic006G166200 Sobic002G235200--Sobic006G166200 Sobic002G235200--Sobic003G036400 Sobic002G235200--Sobic004G320500 Sobic004G224600 Sobic004G224600 Sobic002G235200--Sobic004G224600 Sobic006G139100 Sobic006G139100 Sobic004G145000--Sobic006G139100 Sobic004G340400 Sobic004G340400 Sobic004G145000--Sobic004G340400 Sobic006G034500 Sobic006G034500 Sobic004G145000--Sobic006G034500 Sobic004G145000--Sobic001G447300 Sobic001G455800 Sobic001G455800 Sobic004G145000--Sobic001G455800 Sobic002G256700 Sobic002G256700 Sobic004G145000--Sobic002G256700 Sobic004G145000--Sobic003G036400 Sobic003G104000 Sobic003G104000 Sobic004G145000--Sobic003G104000 Sobic004G145000--Sobic006G166200 Sobic001G052400 Sobic001G052400 Sobic004G320500--Sobic001G052400 Sobic004G320500--Sobic006G086600 Sobic004G320500--Sobic004G340400 Sobic004G320500--Sobic002G256700 Sobic001G493700 Sobic001G493700 Sobic004G320500--Sobic001G493700 Sobic004G320500--Sobic001G089600 Sobic010G102600 Sobic010G102600 Sobic004G320500--Sobic010G102600 Sobic010G003400 Sobic010G003400 Sobic004G320500--Sobic010G003400 Sobic009G255600 Sobic009G255600 Sobic004G320500--Sobic009G255600 Sobic006G136400 Sobic006G136400 Sobic001G447300--Sobic006G136400 Sobic008G055900 Sobic008G055900 Sobic001G447300--Sobic008G055900 Sobic008G099800 Sobic008G099800 Sobic001G447300--Sobic008G099800 Sobic001G447300--Sobic006G166200 Sobic001G447300--Sobic001G455800 Sobic001G447300--Sobic004G145000 Sobic002G371700 Sobic002G371700 Sobic001G447300--Sobic002G371700 Sobic004G053500 Sobic004G053500 Sobic001G447300--Sobic004G053500 Sobic004G353000 Sobic004G353000 Sobic001G447300--Sobic004G353000 Sobic002G408900 Sobic002G408900 Sobic002G150700--Sobic002G408900 Sobic006G002800 Sobic006G002800 Sobic002G150700--Sobic006G002800 Sobic002G150700--Sobic001G455800 Sobic002G150700--Sobic003G146600 Sobic001G099900 Sobic001G099900 Sobic002G150700--Sobic001G099900 Sobic004G208500 Sobic004G208500 Sobic002G150700--Sobic004G208500 Sobic002G398700 Sobic002G398700 Sobic002G150700--Sobic002G398700 Sobic002G150700--Sobic001G145400 Sobic003G304400 Sobic003G304400 Sobic002G150700--Sobic003G304400 Sobic006G208500 Sobic006G208500 Sobic003G006400--Sobic006G208500 Sobic006G200700 Sobic006G200700 Sobic003G006400--Sobic006G200700 Sobic002G275600 Sobic002G275600 Sobic003G006400--Sobic002G275600 Sobic001G369000 Sobic001G369000 Sobic003G006400--Sobic001G369000 Sobic006G138000 Sobic006G138000 Sobic003G006400--Sobic006G138000 Sobic010G151900 Sobic010G151900 Sobic003G006400--Sobic010G151900 Sobic003G006400--Sobic001G145400 Sobic006G077200 Sobic006G077200 Sobic003G006400--Sobic006G077200 Sobic010G007100 Sobic010G007100 Sobic003G006400--Sobic010G007100 Sobic001G145400--Sobic006G086600 Sobic001G035200 Sobic001G035200 Sobic001G145400--Sobic001G035200 Sobic001G145400--Sobic010G059500 Sobic001G145400--Sobic006G077200 Sobic003G405500 Sobic003G405500 Sobic001G145400--Sobic003G405500 Sobic001G145400--Sobic010G007100 Sobic001G145400--Sobic004G340400 Sobic009G084900 Sobic009G084900 Sobic001G145400--Sobic009G084900 Sobic004G085000 Sobic004G085000 Sobic001G145400--Sobic004G085000 Sobic008G088872 Sobic008G088872 Sobic005G062200--Sobic008G088872 Sobic001G263600 Sobic001G263600 Sobic005G062200--Sobic001G263600 Sobic002G401500 Sobic002G401500 Sobic005G062200--Sobic002G401500 Sobic006G184900 Sobic006G184900 Sobic005G062200--Sobic006G184900 Sobic002G042600 Sobic002G042600 Sobic005G062200--Sobic002G042600 Sobic003G209200 Sobic003G209200 Sobic005G062200--Sobic003G209200 Sobic003G114400 Sobic003G114400 Sobic005G062200--Sobic003G114400 Sobic001G065100 Sobic001G065100 Sobic005G062200--Sobic001G065100 Sobic002G335600 Sobic002G335600 Sobic005G062200--Sobic002G335600 Sobic010G116600 Sobic010G116600 Sobic003G093800--Sobic010G116600 Sobic001G065000 Sobic001G065000 Sobic003G093800--Sobic001G065000 Sobic003G408600 Sobic003G408600 Sobic003G093800--Sobic003G408600 Sobic001G536400 Sobic001G536400 Sobic003G093800--Sobic001G536400 Sobic001G058700 Sobic001G058700 Sobic003G093800--Sobic001G058700 Sobic002G299700 Sobic002G299700 Sobic003G093800--Sobic002G299700 Sobic009G044800 Sobic009G044800 Sobic003G093800--Sobic009G044800 Sobic002G071500 Sobic002G071500 Sobic003G093800--Sobic002G071500 Sobic009G249700 Sobic009G249700 Sobic003G093800--Sobic009G249700
Octagon: transcription factors


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