Gene annotation
Transcriptome id Sobic.001G447300.1
Synonym Sb01g042020, ATRLI2, RLI2
Functional annotation ATP-binding cassette sub-family E member 1, putative, expressed
UniProt C5WRR1
Pfam PF00037 PF04068 PF00005
Panther DB PTHR19248
NCBI CDD -
KEGG Orthology K06174; ABCE1, ATP-binding cassette, sub-family E, member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G19210 : RNAse l inhibitor protein 2
RAP-DB (Rice) LOC_Os11g34350.1 : ATP-binding cassette sub-family E member 1, putative, expressed
MaizeGDB (Corn) Zm00025a049533 , Zm00025a002332 , Zm00025a052445 , Zm00025a004812
Brachypodium PNT62169 , KQJ88286 , PNT67899 , KQJ85358 , KQJ85357
Barley HORVU0Hr1G005840.5 , HORVU0Hr1G005840.4 , HORVU0Hr1G005840.1 , HORVU0Hr1G005840.3 , HORVU0Hr1G005840.2 , HORVU1Hr1G055810.18 , HORVU2Hr1G123150.2 , HORVU2Hr1G123150.3 , HORVU2Hr1G123150.1 , HORVU2Hr1G123150.6 , HORVU2Hr1G123150.7 , HORVU2Hr1G123150.4 , HORVU2Hr1G123150.5 , HORVU2Hr1G123150.8 , HORVU2Hr1G123150.9 , HORVU4Hr1G038380.21 , HORVU4Hr1G038380.20 , HORVU1Hr1G055810.19 , HORVU1Hr1G055810.10 , HORVU1Hr1G055810.11 , HORVU1Hr1G055810.12 , HORVU1Hr1G055810.13 , HORVU1Hr1G055810.14 , HORVU1Hr1G055810.15 , HORVU1Hr1G055810.16 , HORVU1Hr1G055810.17 , HORVU1Hr1G055810.29 , HORVU1Hr1G055810.28 , HORVU1Hr1G055810.25 , HORVU1Hr1G055810.24 , HORVU1Hr1G055810.27 , HORVU1Hr1G055810.26 , HORVU1Hr1G055810.21 , HORVU1Hr1G055810.20 , HORVU1Hr1G055810.23 , HORVU1Hr1G055810.22 , HORVU4Hr1G038380.18 , HORVU4Hr1G038380.19 , HORVU4Hr1G038380.10 , HORVU4Hr1G038380.11 , HORVU4Hr1G038380.12 , HORVU4Hr1G038380.13 , HORVU4Hr1G038380.14 , HORVU4Hr1G038380.15 , HORVU4Hr1G038380.16 , HORVU4Hr1G038380.17 , HORVU1Hr1G055810.32 , HORVU1Hr1G055810.33 , HORVU1Hr1G055810.30 , HORVU1Hr1G055810.31 , HORVU1Hr1G055810.36 , HORVU1Hr1G055810.37 , HORVU1Hr1G055810.34 , HORVU1Hr1G055810.35 , HORVU1Hr1G055810.38 , HORVU1Hr1G055810.39 , HORVU4Hr1G038380.8 , HORVU4Hr1G038380.9 , HORVU4Hr1G038380.2 , HORVU4Hr1G038380.3 , HORVU4Hr1G038380.1 , HORVU4Hr1G038380.6 , HORVU4Hr1G038380.7 , HORVU4Hr1G038380.4 , HORVU4Hr1G038380.5 , HORVU2Hr1G123150.11 , HORVU2Hr1G123150.12 , HORVU2Hr1G123150.13 , HORVU2Hr1G123150.14 , HORVU2Hr1G123150.15 , HORVU1Hr1G055810.8 , HORVU1Hr1G055810.2 , HORVU1Hr1G055810.3 , HORVU1Hr1G055810.1 , HORVU1Hr1G055810.6 , HORVU1Hr1G055810.7 , HORVU1Hr1G055810.4 , HORVU1Hr1G055810.5
Wheat TraesCS1D02G220000 , TraesCS2B02G600300 , TraesCS4B02G160000 , TraesCS4A02G143000 , TraesCS4A02G143000 , TraesCS4A02G143000 , TraesCS4A02G143000 , TraesCS4A02G143000 , TraesCS1A02G218400 , TraesCS1A02G218400 , TraesCS4A02G143000 , TraesCS1B02G231900 , TraesCSU02G036500 , TraesCS2D02G594500 , TraesCS4D02G159400
Populus -


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cDNA sequences
Sobic.001G447300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G136400 eukaryotic initiation factor iso-4F subunit p82-34, putative, expressed K03260: translation initiation factor 4G
2 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
3 Sobic.008G099800 expressed protein -
4 Sobic.006G166200 Alg9-like mannosyltransferase protein, putative, expressed K03847: alpha-1,6-mannosyltransferase
5 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
6 Sobic.004G145000 importin-8, putative, expressed -
7 Sobic.002G371700 signal recognition particle 68 kDa protein, putative, expressed K03107: signal recognition particle subunit SRP68
8 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
9 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
10 Sobic.003G036400 - K03254: translation initiation factor 3 subunit A
11 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1
12 Sobic.002G150700 polyadenylate-binding protein, putative, expressed K13126: polyadenylate-binding protein
13 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
14 Sobic.004G178200 ligatin, putative, expressed K15027: translation initiation factor 2D
15 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
16 Sobic.005G110499 - K14006: protein transport protein SEC23
17 Sobic.001G065100 cullin, putative, expressed K10609: cullin 4
18 Sobic.002G020700 WD domain, G-beta repeat domain containing protein, expressed K14018: PLAA, DOA1, phospholipase A-2-activating protein
19 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
20 Sobic.006G208500 proteasome/cyclosome repeat containing protein, expressed K03032: PSMD1, 26S proteasome regulatory subunit N2


Gene co-expression network
sample Sobic001G447300 Sobic001G447300 Sobic006G136400 Sobic006G136400 Sobic001G447300--Sobic006G136400 Sobic008G055900 Sobic008G055900 Sobic001G447300--Sobic008G055900 Sobic008G099800 Sobic008G099800 Sobic001G447300--Sobic008G099800 Sobic006G166200 Sobic006G166200 Sobic001G447300--Sobic006G166200 Sobic001G455800 Sobic001G455800 Sobic001G447300--Sobic001G455800 Sobic004G145000 Sobic004G145000 Sobic001G447300--Sobic004G145000 Sobic002G371700 Sobic002G371700 Sobic001G447300--Sobic002G371700 Sobic004G053500 Sobic004G053500 Sobic001G447300--Sobic004G053500 Sobic004G353000 Sobic004G353000 Sobic001G447300--Sobic004G353000 Sobic008G004600 Sobic008G004600 Sobic006G136400--Sobic008G004600 Sobic004G178200 Sobic004G178200 Sobic006G136400--Sobic004G178200 Sobic006G208500 Sobic006G208500 Sobic006G136400--Sobic006G208500 Sobic004G131300 Sobic004G131300 Sobic006G136400--Sobic004G131300 Sobic004G039600 Sobic004G039600 Sobic006G136400--Sobic004G039600 Sobic006G126100 Sobic006G126100 Sobic006G136400--Sobic006G126100 Sobic002G262900 Sobic002G262900 Sobic006G136400--Sobic002G262900 Sobic006G136400--Sobic001G447300 Sobic002G142900 Sobic002G142900 Sobic006G136400--Sobic002G142900 Sobic002G020700 Sobic002G020700 Sobic008G055900--Sobic002G020700 Sobic010G223300 Sobic010G223300 Sobic008G055900--Sobic010G223300 Sobic008G103300 Sobic008G103300 Sobic008G055900--Sobic008G103300 Sobic010G020400 Sobic010G020400 Sobic008G055900--Sobic010G020400 Sobic008G055900--Sobic006G136400 Sobic008G055900--Sobic001G447300 Sobic008G085700 Sobic008G085700 Sobic008G055900--Sobic008G085700 Sobic006G056200 Sobic006G056200 Sobic008G055900--Sobic006G056200 Sobic008G129600 Sobic008G129600 Sobic008G055900--Sobic008G129600 Sobic006G012500 Sobic006G012500 Sobic008G099800--Sobic006G012500 Sobic001G534800 Sobic001G534800 Sobic008G099800--Sobic001G534800 Sobic004G135400 Sobic004G135400 Sobic008G099800--Sobic004G135400 Sobic001G347500 Sobic001G347500 Sobic008G099800--Sobic001G347500 Sobic001G281100 Sobic001G281100 Sobic008G099800--Sobic001G281100 Sobic004G113400 Sobic004G113400 Sobic008G099800--Sobic004G113400 Sobic008G099800--Sobic004G039600 Sobic003G072200 Sobic003G072200 Sobic008G099800--Sobic003G072200 Sobic001G065000 Sobic001G065000 Sobic008G099800--Sobic001G065000 Sobic005G133800 Sobic005G133800 Sobic006G166200--Sobic005G133800 Sobic006G166200--Sobic004G053500 Sobic008G124800 Sobic008G124800 Sobic006G166200--Sobic008G124800 Sobic003G405500 Sobic003G405500 Sobic006G166200--Sobic003G405500 Sobic006G224800 Sobic006G224800 Sobic006G166200--Sobic006G224800 Sobic001G145400 Sobic001G145400 Sobic006G166200--Sobic001G145400 Sobic010G059500 Sobic010G059500 Sobic006G166200--Sobic010G059500 Sobic002G235200 Sobic002G235200 Sobic006G166200--Sobic002G235200 Sobic009G201700 Sobic009G201700 Sobic006G166200--Sobic009G201700 Sobic009G016400 Sobic009G016400 Sobic001G455800--Sobic009G016400 Sobic002G150700 Sobic002G150700 Sobic001G455800--Sobic002G150700 Sobic006G196300 Sobic006G196300 Sobic001G455800--Sobic006G196300 Sobic004G340400 Sobic004G340400 Sobic001G455800--Sobic004G340400 Sobic001G455800--Sobic002G371700 Sobic001G455800--Sobic001G447300 Sobic001G455800--Sobic002G142900 Sobic008G160000 Sobic008G160000 Sobic001G455800--Sobic008G160000 Sobic001G455800--Sobic001G145400 Sobic006G139100 Sobic006G139100 Sobic004G145000--Sobic006G139100 Sobic004G145000--Sobic004G340400 Sobic006G034500 Sobic006G034500 Sobic004G145000--Sobic006G034500 Sobic004G145000--Sobic001G447300 Sobic004G145000--Sobic001G455800 Sobic002G256700 Sobic002G256700 Sobic004G145000--Sobic002G256700 Sobic003G036400 Sobic003G036400 Sobic004G145000--Sobic003G036400 Sobic003G104000 Sobic003G104000 Sobic004G145000--Sobic003G104000 Sobic004G145000--Sobic006G166200 Sobic002G371700--Sobic008G103300 Sobic002G371700--Sobic004G053500 Sobic002G371700--Sobic010G059500 Sobic002G371700--Sobic002G142900 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic004G053500--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 Sobic006G200700 Sobic006G200700 Sobic004G353000--Sobic006G200700 Sobic009G143800 Sobic009G143800 Sobic004G353000--Sobic009G143800 Sobic010G116600 Sobic010G116600 Sobic004G353000--Sobic010G116600 Sobic007G183900 Sobic007G183900 Sobic004G353000--Sobic007G183900 Sobic002G371300 Sobic002G371300 Sobic004G353000--Sobic002G371300 Sobic004G353000--Sobic002G371700 Sobic009G044800 Sobic009G044800 Sobic004G353000--Sobic009G044800 Sobic001G473600 Sobic001G473600 Sobic004G353000--Sobic001G473600 Sobic001G291800 Sobic001G291800 Sobic004G353000--Sobic001G291800
Octagon: transcription factors


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