Gene annotation
Transcriptome id Sobic.002G371700.1
Synonym Sb02g039040
Functional annotation signal recognition particle 68 kDa protein, putative, expressed
UniProt A0A1B6QFH8
Pfam PF16969
Panther DB PTHR12860
NCBI CDD KOG2460; Signal recognition particle, subunit Srp68
KEGG Orthology K03107; signal recognition particle subunit SRP68
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G61970 : signal recognition particle-related / SRP-related
RAP-DB (Rice) LOC_Os08g23360.1 : signal recognition particle 68 kDa protein, putative, expressed
MaizeGDB (Corn) Zm00025a048732
Brachypodium KQJ93876
Barley HORVU5Hr1G042050.2 , HORVU5Hr1G042050.3 , HORVU5Hr1G042050.1
Wheat TraesCS5D02G136900 , TraesCS5D02G136900 , TraesCS5B02G128000 , TraesCS5A02G129400 , TraesCS5B02G128000
Populus -


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cDNA sequences
Sobic.002G371700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G103300 vacuolar protein sorting-associated protein 26, putative, expressed K18466: vacuolar protein sorting-associated protein 26
2 Sobic.004G053500 HEAT repeat family protein, putative, expressed K17263: CAND1, cullin-associated NEDD8-dissociated protein 1
3 Sobic.010G059500 pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16, putative, expressed K12818: DHX8, ATP-dependent RNA helicase DHX8/PRP22
4 Sobic.002G142900 immunoglobulin/major histocompatibility complex, putative, expressed K12607: CCR4-NOT transcription complex subunit 10
5 Sobic.004G131300 expressed protein K12617: PATL1, DNA topoisomerase 2-associated protein PAT1
6 Sobic.002G401500 WD domain, G-beta repeat domain containing protein, expressed K14005: protein transport protein SEC31
7 Sobic.005G110499 - K14006: protein transport protein SEC23
8 Sobic.001G087600 ZOS9-03 - C2H2 zinc finger protein, expressed -
9 Sobic.003G363700 OsFBL5 - F-box domain and LRR containing protein, expressed -
10 Sobic.003G046300 ubiquitin carboxyl-terminal hydrolase 14, putative, expressed K11836: USP5_13, ubiquitin carboxyl-terminal hydrolase 5/13
11 Sobic.001G035200 ThiF family domain containing protein, putative, expressed K04532: NAE1, amyloid beta precursor protein binding protein 1
12 Sobic.004G353000 ABC transporter, ATP-binding protein, putative, expressed K06158: ATP-binding cassette, subfamily F, member 3
13 Sobic.001G145400 threonyl-tRNA synthetase, mitochondrial precursor, putative, expressed K01868: TARS, threonyl-tRNA synthetase
14 Sobic.004G256500 WD domain, G-beta repeat domain containing protein, expressed K12616: enhancer of mRNA-decapping protein 4
15 Sobic.010G266500 BRE, putative, expressed K12173: BRE, BRCA1-A complex subunit BRE
16 Sobic.009G164000 tentative name(PubMedID : 31536532)@cysteinyl-tRNA synthetase, putative, expressed K01883: CARS, cysteinyl-tRNA synthetase
17 Sobic.001G461400 pre-mRNA-processing factor 39, putative, expressed K13217: PRPF39, pre-mRNA-processing factor 39
18 Sobic.001G455800 methionyl-tRNA synthetase, putative, expressed K01874: MARS, methionyl-tRNA synthetase
19 Sobic.008G055900 transmembrane 9 superfamily member, putative, expressed K17087: transmembrane 9 superfamily member 3
20 Sobic.006G200700 elongation factor Tu, putative, expressed K14416: elongation factor 1 alpha-like protein


Gene co-expression network
sample Sobic002G371700 Sobic002G371700 Sobic008G103300 Sobic008G103300 Sobic002G371700--Sobic008G103300 Sobic004G053500 Sobic004G053500 Sobic002G371700--Sobic004G053500 Sobic010G059500 Sobic010G059500 Sobic002G371700--Sobic010G059500 Sobic002G142900 Sobic002G142900 Sobic002G371700--Sobic002G142900 Sobic004G131300 Sobic004G131300 Sobic002G371700--Sobic004G131300 Sobic002G401500 Sobic002G401500 Sobic002G371700--Sobic002G401500 Sobic005G110499 Sobic005G110499 Sobic002G371700--Sobic005G110499 Sobic001G087600 Sobic001G087600 Sobic002G371700--Sobic001G087600 Sobic003G363700 Sobic003G363700 Sobic002G371700--Sobic003G363700 Sobic008G055900 Sobic008G055900 Sobic008G103300--Sobic008G055900 Sobic008G103300--Sobic002G371700 Sobic003G046300 Sobic003G046300 Sobic008G103300--Sobic003G046300 Sobic003G132000 Sobic003G132000 Sobic008G103300--Sobic003G132000 Sobic005G074500 Sobic005G074500 Sobic008G103300--Sobic005G074500 Sobic001G114500 Sobic001G114500 Sobic008G103300--Sobic001G114500 Sobic001G145400 Sobic001G145400 Sobic008G103300--Sobic001G145400 Sobic006G200700 Sobic006G200700 Sobic008G103300--Sobic006G200700 Sobic002G295500 Sobic002G295500 Sobic008G103300--Sobic002G295500 Sobic004G053500--Sobic002G401500 Sobic002G179400 Sobic002G179400 Sobic004G053500--Sobic002G179400 Sobic002G335600 Sobic002G335600 Sobic004G053500--Sobic002G335600 Sobic006G166200 Sobic006G166200 Sobic004G053500--Sobic006G166200 Sobic006G032300 Sobic006G032300 Sobic004G053500--Sobic006G032300 Sobic005G133800 Sobic005G133800 Sobic004G053500--Sobic005G133800 Sobic002G340900 Sobic002G340900 Sobic004G053500--Sobic002G340900 Sobic003G296900 Sobic003G296900 Sobic004G053500--Sobic003G296900 Sobic005G162500 Sobic005G162500 Sobic004G053500--Sobic005G162500 Sobic009G084900 Sobic009G084900 Sobic010G059500--Sobic009G084900 Sobic009G131300 Sobic009G131300 Sobic010G059500--Sobic009G131300 Sobic001G035200 Sobic001G035200 Sobic010G059500--Sobic001G035200 Sobic004G096400 Sobic004G096400 Sobic010G059500--Sobic004G096400 Sobic006G234700 Sobic006G234700 Sobic010G059500--Sobic006G234700 Sobic010G059500--Sobic001G145400 Sobic010G034100 Sobic010G034100 Sobic010G059500--Sobic010G034100 Sobic006G077200 Sobic006G077200 Sobic010G059500--Sobic006G077200 Sobic001G493200 Sobic001G493200 Sobic010G059500--Sobic001G493200 Sobic002G142900--Sobic004G131300 Sobic001G263600 Sobic001G263600 Sobic002G142900--Sobic001G263600 Sobic002G133300 Sobic002G133300 Sobic002G142900--Sobic002G133300 Sobic003G195000 Sobic003G195000 Sobic002G142900--Sobic003G195000 Sobic007G054800 Sobic007G054800 Sobic002G142900--Sobic007G054800 Sobic002G142900--Sobic005G162500 Sobic003G104000 Sobic003G104000 Sobic002G142900--Sobic003G104000 Sobic002G256700 Sobic002G256700 Sobic002G142900--Sobic002G256700 Sobic002G142900--Sobic002G335600 Sobic004G131300--Sobic002G133300 Sobic004G131300--Sobic002G142900 Sobic005G172500 Sobic005G172500 Sobic004G131300--Sobic005G172500 Sobic004G131300--Sobic009G084900 Sobic004G256500 Sobic004G256500 Sobic004G131300--Sobic004G256500 Sobic004G131300--Sobic010G059500 Sobic004G131300--Sobic007G054800 Sobic006G136400 Sobic006G136400 Sobic004G131300--Sobic006G136400 Sobic004G131300--Sobic002G256700 Sobic004G322400 Sobic004G322400 Sobic002G401500--Sobic004G322400 Sobic002G401500--Sobic009G131300 Sobic002G042600 Sobic002G042600 Sobic002G401500--Sobic002G042600 Sobic002G401500--Sobic004G053500 Sobic005G062200 Sobic005G062200 Sobic002G401500--Sobic005G062200 Sobic002G429300 Sobic002G429300 Sobic002G401500--Sobic002G429300 Sobic001G065100 Sobic001G065100 Sobic002G401500--Sobic001G065100 Sobic008G088872 Sobic008G088872 Sobic002G401500--Sobic008G088872 Sobic002G401500--Sobic001G263600 Sobic003G189600 Sobic003G189600 Sobic005G110499--Sobic003G189600 Sobic001G474400 Sobic001G474400 Sobic005G110499--Sobic001G474400 Sobic001G308400 Sobic001G308400 Sobic005G110499--Sobic001G308400 Sobic003G394200 Sobic003G394200 Sobic005G110499--Sobic003G394200 Sobic005G110499--Sobic004G053500 Sobic005G110499--Sobic002G401500 Sobic006G021700 Sobic006G021700 Sobic005G110499--Sobic006G021700 Sobic005G110499--Sobic002G371700 Sobic003G209200 Sobic003G209200 Sobic005G110499--Sobic003G209200 Sobic001G151100 Sobic001G151100 Sobic001G087600--Sobic001G151100 Sobic001G461400 Sobic001G461400 Sobic001G087600--Sobic001G461400 Sobic001G020000 Sobic001G020000 Sobic001G087600--Sobic001G020000 Sobic002G145800 Sobic002G145800 Sobic001G087600--Sobic002G145800 Sobic002G154000 Sobic002G154000 Sobic001G087600--Sobic002G154000 Sobic003G416700 Sobic003G416700 Sobic001G087600--Sobic003G416700 Sobic002G430300 Sobic002G430300 Sobic001G087600--Sobic002G430300 Sobic005G167700 Sobic005G167700 Sobic001G087600--Sobic005G167700 Sobic001G087600--Sobic002G371700 Sobic003G379200 Sobic003G379200 Sobic003G363700--Sobic003G379200 Sobic001G237600 Sobic001G237600 Sobic003G363700--Sobic001G237600 Sobic004G265500 Sobic004G265500 Sobic003G363700--Sobic004G265500 Sobic003G363700--Sobic002G371700 Sobic009G228000 Sobic009G228000 Sobic003G363700--Sobic009G228000 Sobic002G374300 Sobic002G374300 Sobic003G363700--Sobic002G374300 Sobic003G043000 Sobic003G043000 Sobic003G363700--Sobic003G043000 Sobic010G000800 Sobic010G000800 Sobic003G363700--Sobic010G000800 Sobic003G182300 Sobic003G182300 Sobic003G363700--Sobic003G182300
Octagon: transcription factors


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